checkCohortRequirements: Check whether a cohort table satisfies requirements

In omopgenerics: Methods and Classes for the OMOP Common Data Model

Check whether a cohort table satisfies requirements

Description

Usage

checkCohortRequirements(
  cohort,
  checkEndAfterStart = TRUE,
  checkOverlappingEntries = TRUE,
  checkMissingValues = TRUE,
  checkInObservation = TRUE,
  type = "error",
  call = parent.frame()
)

Arguments

cohort	cohort_table object.
checkEndAfterStart	If TRUE a check that all cohort end dates come on or after cohort start date will be performed.
checkOverlappingEntries	If TRUE a check that no individuals have overlapping cohort entries will be performed.
checkMissingValues	If TRUE a check that there are no missing values in required fields will be performed.
checkInObservation	If TRUE a check that cohort entries are within the individuals observation periods will be performed.
type	Can be either "error" or "warning". If "error" any check failure will result in an error, whereas if "warning" any check failure will result in a warning.
call	The call for which to return the error message.

Value

An error will be returned if any of the selected checks fail.

omopgenerics documentation built on Sept. 30, 2024, 9:16 a.m.