cdmFromTables: Create a cdm object from local tables

In omopgenerics: Methods and Classes for the OMOP Common Data Model

Create a cdm object from local tables

Description

Create a cdm object from local tables

Usage

cdmFromTables(tables, cdmName, cohortTables = list(), cdmVersion = NULL)

Arguments

tables	List of tables to be part of the cdm object.
cdmName	Name of the cdm object.
cohortTables	List of tables that contains cohort, cohort_set and cohort_attrition can be provided as attributes.
cdmVersion	Version of the cdm_reference

Value

A cdm_reference object.

Examples

library(omopgenerics)
library(dplyr, warn.conflicts = FALSE)

person <- tibble(
  person_id = 1, gender_concept_id = 0, year_of_birth = 1990,
  race_concept_id = 0, ethnicity_concept_id = 0
)
observation_period <- tibble(
  observation_period_id = 1, person_id = 1,
  observation_period_start_date = as.Date("2000-01-01"),
  observation_period_end_date = as.Date("2023-12-31"),
  period_type_concept_id = 0
)
cdm <- cdmFromTables(
  tables = list("person" = person, "observation_period" = observation_period),
  cdmName = "test"
)

omopgenerics documentation built on Sept. 30, 2024, 9:16 a.m.