Man pages for omu
A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection
| assign_hierarchy | Assign hierarchy metadata |
| c57_nos2KO_mouse_countDF | c57b6J nos2KO metabolomics count matrix |
| c57_nos2KO_mouse_metadata | c57b6J nos2KO meta data |
| check_zeros | Check data for zeros across samples within factor levels.... |
| count_fold_changes | Get counts for significant fold changes by metabolite class. |
| get_seqs | Get nucleotide and amino acid sequences for genes |
| KEGG_gather | Gather metadata from KEGG for metabolites |
| make_omelette | Get metadata from KEGG API |
| omu_anova | Perform anova |
| omu_summary | omu_summary Performs comparison of means between two... |
| PCA_plot | Create a PCA plot |
| pie_chart | Create a pie chart |
| plate_omelette | plate_omelette Internal method for KEGG_Gather which parses... |
| plate_omelette_rxnko | Clean up orthology metadata |
| plot_bar | Create a bar plot |
| plot_boxplot | Create a box plot |
| plot_heatmap | Create a heatmap |
| plot_rf_PCA | plot_rf_PCA |
| plot_variable_importance | plot_variable_importance |
| plot_volcano | Create a volcano plot |
| random_forest | random_forest Perform a classification or regression random... |
| ra_table | Creates a ratio table from the count_fold_changes function... |
| read_metabo | Import a metabolomics count data frame |
| transform_metabolites | transform_metabolites |
| transform_samples | transform_samples |
