KEGG_gather: Gather metadata from KEGG for metabolites

Description Usage Arguments Examples

View source: R/KEGG_gather.R

Description

Method for gathering metadata from the KEGG API.

Usage

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KEGG_gather(count_data)

## S3 method for class 'cpd'
KEGG_gather(count_data)

## S3 method for class 'rxn'
KEGG_gather(count_data)

## S3 method for class 'KO'
KEGG_gather(count_data)

Arguments

count_data

A metabolmics count dataframe with a KEGG identifier columns

Examples

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count_data <- assign_hierarchy(count_data = c57_nos2KO_mouse_countDF,
keep_unknowns = TRUE, identifier = "KEGG")

count_data <- subset(count_data, Subclass_2=="Aldoses")

count_data <- KEGG_gather(count_data = count_data)

omu documentation built on July 1, 2020, 5:18 p.m.