KEGG_gather: Gather metadata from KEGG for metabolites

In omu: A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection

Gather metadata from KEGG for metabolites

Description

Method for gathering metadata from the KEGG API.

Usage

KEGG_gather(count_data)

## S3 method for class 'cpd'
KEGG_gather(count_data)

## S3 method for class 'rxn'
KEGG_gather(count_data)

## S3 method for class 'KO'
KEGG_gather(count_data)

Arguments

count_data

A metabolomics count dataframe with a KEGG identifier columns

Examples

## Not run: 
count_data <- assign_hierarchy(count_data = c57_nos2KO_mouse_countDF,
keep_unknowns = TRUE, identifier = "KEGG")

count_data <- subset(count_data, Subclass_2=="Aldoses")

count_data <- KEGG_gather(count_data = count_data)

## End(Not run)

omu documentation built on Oct. 17, 2023, 1:06 a.m.