Man pages for omu
A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection

assign_hierarchyAssign hierarchy metadata
c57_nos2KO_mouse_countDFc57b6J nos2KO metabolomics count matrix
c57_nos2KO_mouse_metadatac57b6J nos2KO meta data
check_zerosCheck data for zeros across samples within factor levels....
count_fold_changesGet counts for significant fold changes by metabolite class.
get_seqsGet nucleotide and amino acid sequences for genes
KEGG_gatherGather metadata from KEGG for metabolites
make_omeletteGet metadata from KEGG API
omu_anovaPerform anova
omu_summaryomu_summary Performs comparison of means between two...
PCA_plotCreate a PCA plot
pie_chartCreate a pie chart
plate_omeletteplate_omelette Internal method for KEGG_Gather which parses...
plate_omelette_rxnkoClean up orthology metadata
plot_barCreate a bar plot
plot_boxplotCreate a box plot
plot_heatmapCreate a heatmap
plot_rf_PCAplot_rf_PCA
plot_variable_importanceplot_variable_importance
plot_volcanoCreate a volcano plot
random_forestrandom_forest Perform a classification or regression random...
ra_tableCreates a ratio table from the count_fold_changes function...
read_metaboImport a metabolomics count data frame
transform_metabolitestransform_metabolites
transform_samplestransform_samples
omu documentation built on Aug. 27, 2022, 5:05 p.m.