ra_table | R Documentation |
Create a ratio table
ra_table(fc_data, variable)
fc_data |
data frame output from the count_fold_changes function |
variable |
metadata from count_fold_changes, i.e. "Class" |
c57_nos2KO_mouse_countDF <- assign_hierarchy(c57_nos2KO_mouse_countDF, TRUE, "KEGG")
t_test_df <- omu_summary(count_data = c57_nos2KO_mouse_countDF,
metadata = c57_nos2KO_mouse_metadata, numerator = "Strep", denominator = "Mock",
response_variable = "Metabolite", Factor = "Treatment",
log_transform = TRUE, p_adjust = "BH", test_type = "welch")
fold_change_counts <- count_fold_changes(count_data = t_test_df,
column = "Class", sig_threshold = 0.05, keep_unknowns = FALSE)
ra_table(fc_data = fold_change_counts, variable = "Class")
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.