Description Usage Arguments Value Slots Examples
A multimodal_ondisc_matrix
represents multimodal data.
Construct a multimodal_ondisc_matrix
from a list of metadata_ondisc_matrix
objects.
1 2 3 | multimodal_ondisc_matrix(metadata_ondisc_matrix_list)
multimodal_ondisc_matrix(metadata_ondisc_matrix_list)
|
metadata_ondisc_matrix_list |
a named list containing |
a multimodal_ondisc_matrix
modalities
a list containing metadata_ondisc_matrix
objects representing different modalities.
global_cell_covariates
a data frame containing the cell-specific covariates pooled across all modalities.
1 2 3 4 5 6 7 8 9 10 11 12 | # NOTE: You must create the RDS files "expressions.rds" and
# "perturbations.rds" to run this example. Navigate to the help file of
# "create_ondisc_matrix_from_mtx" (via ?create_ondisc_matrix_from_mtx),
# and execute both code blocks.
expression_fp <- paste0(tempdir(), "/expressions.rds")
perturbations_fp <- paste0(tempdir(), "/perturbations.rds")
if (file.exists(expression_fp) && file.exists(perturbations_fp)) {
expressions <- readRDS(expression_fp)
perturbations <- readRDS(perturbations_fp)
crispr_experiment <- multimodal_ondisc_matrix(list(expressions = expressions,
perturbations = perturbations))
}
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