summary.vacalibration: Summary of results obtained by vacalibration

In openVA: Automated Method for Verbal Autopsy

Summary of results obtained by vacalibration

Description

This function prints a summary message of the results along with the top cause-specific mortality fractions (CSMFs).

Usage

## S3 method for class 'vacalibration'
summary(object, top = 5, rnd = 4, algorithm = NULL, ...)

Arguments

object	vacalibration object
top	number of top CSMF to show
rnd	number of decimal places to round the CSMF
algorithm	a name or vector of names of algorithm(s) which limits the output to those specific results
...	not used

Examples

## Not run: 
data(NeonatesVA5)
fit_insilico <- codeVA(NeonatesVA5, auto.length = FALSE)
insilico_prep <- prepCalibration(fit_insilico)
calib_insilico = vacalibration::vacalibration(va_data = insilico_prep,
                                              age_group = "neonate",
                                              country = "Mozambique",
                                              plot_it = FALSE)
calib_insilico_summ <- summary(calib_insilico)
names(calib_insilico_summ)
calib_insilico_summ

fit_interva <- codeVA(NeonatesVA5, model = "InterVA", version = "5", write = FALSE)
interva_prep <- prepCalibration(fit_interva)
calib_interva = vacalibration::vacalibration(va_data = interva_prep,
                                             age_group = "neonate",
                                             country = "Mozambique",
                                             plot_it = FALSE)
summary(calib_interva, top = 3)

two_fits <- prepCalibration(fit_insilico, fit_interva)
calib_ensemble = vacalibration::vacalibration(va_data = two_fits,
                                              age_group = "neonate",
                                              country = "Mozambique",
                                              plot_it = FALSE)
summary(calib_ensemble)

## End(Not run)

openVA documentation built on Nov. 5, 2025, 5:20 p.m.