optBiomarker: Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
Version 1.0-27

Estimates optimal number of biomarkers for two-group classification based on microarray data

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AuthorMizanur Khondoker <mizanur.khondoker@gmail.com>
Date of publication2013-07-11 07:37:56
MaintainerMizanur Khondoker <mizanur.khondoker@gmail.com>
LicenseGPL (>= 2)
Version1.0-27
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("optBiomarker")

Man pages

classificationError.data.frame: Estimation of misclassification errors (generalisation...
errorDbase: Database of leave-one-out cross validation errors for various...
internal: Internal functions for optBiomarker package.
optBiomarker-package: R package for estimating optimal number of biomarkers at a...
optimiseBiomarker: Estimates optimal number of biomarkers at a given error...
realBiomarker: A set of 54359 median gene expressions in log (base 2) scale
simData: Simulation of microarray data

Functions

avg2Lower Man page Source code
classificationError Man page Source code
classificationError.data.frame Man page Source code
classificationError.default Man page Source code
classpredict.knn Man page Source code
classpredict.lda Man page Source code
dimSelect Man page Source code
errorDbase Man page
matapprox Man page Source code
objFun Man page Source code
optBiomarker Man page
optBiomarker-package Man page
optimiseBiomarker Man page Source code
plot3dFun Man page Source code
realBiomarker Man page
simData Man page Source code
tnormAvg Man page Source code
yapprox Man page Source code

Files

MD5
man
man/simData.Rd
man/realBiomarker.Rd
man/optimiseBiomarker.Rd
man/optBiomarker-package.Rd
man/internal.Rd
man/errorDbase.Rd
man/classificationError.data.frame.Rd
inst
inst/doc
inst/doc/optBiomarker-screenshot.pdf
data
data/realBiomarker.RData
data/errorDbase.RData
R
R/simData.R
R/optimiseBiomarker.R
R/internal.R
R/classificationError.data.frame.R
NAMESPACE
DESCRIPTION
optBiomarker documentation built on May 19, 2017, 4:21 p.m.