Files in packDAMipd
Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data
MD5
README.md
NAMESPACE
DESCRIPTION
R/help_parameter_estimation_survival.R
R/help_model_functions.R
R/2b_parameter_estimation_survival_functions.R
R/1_model_functions.R
R/3a_trialdata_analysis_input_functions.R
R/data.R
R/toy_model.R
R/3b_outcome_analysis_functions.R
R/3c_costing_medication_functions.R
R/help_cost_analysis_functions.R
R/help_parameter_estimation_functions.R
R/4a_deterministic_sensitivity_analysis_functions.R
R/3d_decision_analysis_functions.R
R/globals.R
R/3c_costing_resource_use_functions.R
R/4b_probabilistic_sensitivity_analysis_functions.R
R/2a_parameter_estimation_functions.R
inst/doc/Probabilstic_sensitivity_analysis.Rmd
inst/doc/Probabilstic_sensitivity_analysis.R
inst/doc/Sick_sicker_age_dependent.html
inst/doc/Deterministic_sensitivity_analysis.html
inst/doc/Simple_sick_sicker.html
inst/doc/Sick_sicker_age_dependent.Rmd
inst/doc/cycle_dependent.Rmd
inst/doc/Deterministic_sensitivity_analysis.Rmd
inst/doc/Sick_sicker_age_dependent.R
inst/doc/Simple_sick_sicker.Rmd
inst/doc/Deterministic_sensitivity_analysis.R
inst/doc/cycle_dependent.R
inst/doc/Probabilstic_sensitivity_analysis.html
inst/doc/Simple_sick_sicker.R
inst/doc/cycle_dependent.html
inst/extdata/Med_calc_unit_notright.xlsx
inst/extdata/average_unit_costs_med_brand_sizecol_error.csv
inst/extdata/costs_resource_use_nohos.csv
inst/extdata/resource_use_hc_2_noname.csv
inst/extdata/LifeTable_USA_Mx_2015.csv
inst/extdata/patient_adm_cost_NEL.xlsx
inst/extdata/average_unit_costs_med_brand_unitnotidentify.csv
inst/extdata/trial_data_sampleEq5d.csv
inst/extdata/National_schedule_of_NHS_costs_2019.csv
inst/extdata/costs_resource_use_unitexpressed_notright.csv
inst/extdata/resource_use_ae_ip_lessnumuse.csv
inst/extdata/Med_calc_nodrugcol.xlsx
inst/extdata/medication_liq_codes.xlsx
inst/extdata/average_unit_costs_med_brand_nomatchingdose.csv
inst/extdata/Med_calc_testNA.xlsx
inst/extdata/Med_calc.xlsx
inst/extdata/data_linear_mixed_model.csv
inst/extdata/trial_data_sampleEq5d3l.csv
inst/extdata/resource_use_hc_ip_nocol_numuse.csv
inst/extdata/resource_use_hc_2_codes.csv
inst/extdata/Med_calc_nounitcol.xlsx
inst/extdata/resource_use_hc_ip_nocols.csv
inst/extdata/survival_aml.csv
inst/extdata/National_schedule_of_NHS_costs_2019_error.csv
inst/extdata/eq5d.RDS
inst/extdata/Med_calc_noformcol.xlsx
inst/extdata/value_na.csv
inst/extdata/glmm_data.csv
inst/extdata/Med_calc_noconvfactorcol.xlsx
inst/extdata/resource_use_ae_ip_nonumusecol.csv
inst/extdata/medication_namemissing.xlsx
inst/extdata/table_param.csv
inst/extdata/NHS_costs_2019_AandE.xlsx
inst/extdata/average_unit_costs_med_brand_bottlevol_notmatching.csv
inst/extdata/average_unit_costs_med_nounitcost.csv
inst/extdata/average_unit_costs_med.csv
inst/extdata/average_unit_costs_med_brand_brandcolname_error.csv
inst/extdata/resource_use_hc_ip_numuse_wrong.csv
inst/extdata/medication_liq_codes_notprep.xlsx
inst/extdata/resource_use_hc_ip_el_missing.csv
inst/extdata/costs_resource_use_nounitcostcol.csv
inst/extdata/medication_liq_liqlastsbeforeday.xlsx
inst/extdata/average_unit_costs_med_brand_nounitcostcol.csv
inst/extdata/medication_all.xlsx
inst/extdata/National_schedule_of_NHS_costs_2019_AandE.csv
inst/extdata/trial_data_sample_error.csv
inst/extdata/resource_use_hc_2.csv
inst/extdata/average_unit_costs_med_brand_notcostedperbottle.csv
inst/extdata/resource_use_hc_ip_nocol.csv
inst/extdata/resource_use_ae_ip.csv
inst/extdata/medication_liq_codes_namenotsameasdose.xlsx
inst/extdata/resource_use_ae_ip_notypecol.csv
inst/extdata/data.txt
inst/extdata/resource_use_hc_ip_nonumuse.csv
inst/extdata/resource_use_hc_ip.csv
inst/extdata/medication_all_no_tabname.xlsx
inst/extdata/nostrategy.csv
inst/extdata/average_unit_costs_med_brand_nodosage.csv
inst/extdata/sureg_data.csv
inst/extdata/costs_resource_use.csv
inst/extdata/patient_adm_cost_EL.xlsx
inst/extdata/resource_use_hc_ip_noelcol.csv
inst/extdata/medication_liq.xlsx
inst/extdata/table_param_distrb_no.csv
inst/extdata/resource_use_hc_ip_numuse_missing.csv
inst/extdata/culcita_data.csv
inst/extdata/nocol_parameter.csv
inst/extdata/average_unit_costs_med_namecolname_error.csv
inst/extdata/trial_data_sample_notenoughcol.csv
inst/extdata/average_unit_costs_med_brand_errorbrand.csv
inst/extdata/test.xlsx
inst/extdata/lm_dat.csv
inst/extdata/medication.xlsx
inst/extdata/trial_data.csv
inst/extdata/hsb2.dta
inst/extdata/medication_nopatchname.xlsx
inst/extdata/binary.csv
inst/extdata/costs_resource_use_nonameres.csv
inst/extdata/resource_use_ae_ip_lengthtypecodediff.csv
inst/extdata/resource_use_hc_2_unitlength.csv
inst/extdata/average_unit_costs_med_formcolname_error.csv
inst/extdata/National_schedule_of_NHS_costs_2019_error.xlsx
inst/extdata/medication_liq_nonamecol.xlsx
inst/extdata/medication_liq_bottlevol_unitdiff.xlsx
inst/extdata/table_param_nostrategycol.csv
inst/extdata/LifeTable_USA_Mx_2015_agerange.csv
inst/extdata/resource_use_ae_ip_extranumuse.csv
inst/extdata/NHS_costs_2019_AandE_nocode.csv
inst/extdata/medication_with_codes.xlsx
inst/extdata/survival_lung.csv
inst/extdata/lmmdata.csv
inst/extdata/average_unit_costs_med_brand.csv
inst/extdata/desktop.ini
build/vignette.rds
tests/testthat.R
tests/testthat/test-help_cost_analysis_functions.R
tests/testthat/test-2a_parameter_estimation_functions.R
tests/testthat/test-3a_trialdata_analysis_input_functions.R
tests/testthat/test-1_model_functions.R
tests/testthat/test-2b_parameter_estimation_survival_functions.R
tests/testthat/test-help_model_functions.R
tests/testthat/test-help_parameter_estimation_survival.R
tests/testthat/test-3b_outcome_analysis_functions.R
tests/testthat/test-help_parameter_estimation_functions.R
tests/testthat/test-4b_probabilistic_sensitivity_analysis_functions.R
tests/testthat/test-3c_costing_medication_functions.R
tests/testthat/test-3c_costing_resource_use_functions.R
tests/testthat/test-4a_deterministic_sensitivity_analysis_functions.R
tests/testthat/test-3d_decision_analysis_functions.R
vignettes/Probabilstic_sensitivity_analysis.Rmd
vignettes/ref.bib
vignettes/Sick_sicker_age_dependent.Rmd
vignettes/cycle_dependent.Rmd
vignettes/Deterministic_sensitivity_analysis.Rmd
vignettes/Simple_sick_sicker.Rmd
data/table_param.rda
data/blank.rda
data/trial_data.rda
data/trace_data.rda
data/cost_data.rda
data/utility_data.rda
data/adl_scoring.rda
man/plot_prediction_parametric_survival.Rd
man/check_trans_prob.Rd
man/report_sensitivity_analysis.Rd
man/trial_data.Rd
man/get_cost_ip_dc_hrg.Rd
man/get_extension_file.Rd
man/get_slope_intercept.Rd
man/find_required_parameter_combs.Rd
man/find_parameters_btn_operators.Rd
man/strategy.Rd
man/do_diagnostic_glm.Rd
man/microcosting_patches_long.Rd
man/populate_transition_matrix.Rd
man/return_equal_liststring_listcol.Rd
man/combine_markov.Rd
man/costing_resource_use.Rd
man/convert_freq_diff_basis.Rd
man/check_link_glm.Rd
man/use_survival_analysis.Rd
man/return0_if_not_null_na.Rd
man/get_parameter_def_distribution.Rd
man/checks_plot_dsa.Rd
man/plot_return_survival_curve.Rd
man/combine_state.Rd
man/convert_wtpertimediff_basis.Rd
man/get_colnames_codedvalues.Rd
man/eval_assign_values_states.Rd
man/microcosting_patches_wide.Rd
man/return_equal_liststring_col.Rd
man/get_age_details.Rd
man/convert_volume_basis.Rd
man/get_cost_ip_dc_description.Rd
man/word2num.Rd
man/make_string_covariates.Rd
man/get_col_multiple_pattern.Rd
man/find_keyword_regression_method.Rd
man/get_var_state.Rd
man/get_mean_sd_age.Rd
man/define_parameters.Rd
man/check_estimate_substitute_proper_params.Rd
man/define_transition_table.Rd
man/map_eq5d5Lto3L_VanHout.Rd
man/init_trace.Rd
man/use_generalised_linear_mixed_model.Rd
man/do_diagnostic_linear_regression.Rd
man/generate_wt_vol_units.Rd
man/use_fh2_survival.Rd
man/eval_assign_trans_prob.Rd
man/do_sensitivity_analysis.Rd
man/return_equal_str_col.Rd
man/plot_dsa_others_range.Rd
man/plot_efficiency_frontier.Rd
man/form_expression_lm.Rd
man/transition_cost_util.Rd
man/summary_plot_psa.Rd
man/plot_return_residual_cox.Rd
man/utility_data.Rd
man/use_seemingly_unrelated_regression.Rd
man/plot_dsa_icer_range.Rd
man/get_cost_AandE_code.Rd
man/set_var_state.Rd
man/costing_AandE_admission.Rd
man/use_km_survival.Rd
man/plot_dsa_difference.Rd
man/cost_data.Rd
man/get_mortality_from_file.Rd
man/trace_data.Rd
man/get_outcome_details.Rd
man/get_parameter_read.Rd
man/use_linear_regression.Rd
man/get_eq5d_details.Rd
man/find_glm_distribution.Rd
man/microcosting_liquids_wide.Rd
man/checks_markov_pick_method.Rd
man/check_estimate_required_params.Rd
man/adl_scoring.Rd
man/check_list_markov_models.Rd
man/get_slope_intercept_nested.Rd
man/value_ADL_scores_IPD.Rd
man/form_expression_mixed_model_lme4.Rd
man/plot_dsa.Rd
man/get_trial_arm_details.Rd
man/plot_model.Rd
man/costing_inpatient_daycase_admission.Rd
man/define_parameters_sens_anal.Rd
man/prediction_regression.Rd
man/blank.Rd
man/plot_survival_cox_covariates.Rd
man/do_psa.Rd
man/define_parameters_psa.Rd
man/list_paramwise_psa_result.Rd
man/get_gender_details.Rd
man/plot_return_residual_survival.Rd
man/predict_coxph.Rd
man/assign_parameters.Rd
man/load_trial_data.Rd
man/value_eq5d3L_IPD.Rd
man/microcosting_tablets_wide.Rd
man/convert_weight_diff_basis.Rd
man/convert_to_given_timeperiod.Rd
man/find_survreg_distribution.Rd
man/markov_model.Rd
man/microcosting_liquids_long.Rd
man/use_fh_survival.Rd
man/get_parameter_direct.Rd
man/table_param.Rd
man/encode_codes_data.Rd
man/use_linear_mixed_model.Rd
man/get_cost_AandE_description.Rd
man/value_eq5d5L_IPD.Rd
man/form_expression_glm.Rd
man/find_keyword_rand_generation.Rd
man/get_name_value_probdistrb_def.Rd
man/keep_results_plot_dsa.Rd
man/get_slope_intercept_cross.Rd
man/calculate_icer_nmb.Rd
man/check_treatment_arm.Rd
man/health_state.Rd
man/generate_wt_time_units.Rd
man/use_generalised_linear_model.Rd
man/plot_dsa_nmb_range.Rd
man/plot_ceac.Rd
man/create_new_dataset.Rd
man/get_timepoint_details.Rd
man/check_null_na.Rd
man/check_values_states.Rd
man/use_parametric_survival.Rd
man/microcosting_tablets_long.Rd
man/value_Shows_IPD.Rd
man/use_coxph_survival.Rd
man/get_parameter_estimated_regression.Rd
