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pagoo: Analyze Bacterial Pangenomes in R with 'Pagoo'
Provides an encapsulated, object-oriented class system for analyzing bacterial pangenomes. For a definition of this concept, see Tettelin, et al. (2005) <doi:10.1073/pnas.0506758102>. It uses the R6 package as backend. It was designed in order to facilitate and speed-up the comparative analysis of multiple bacterial genomes, standardizing and optimizing routine tasks performed everyday. There are a handful of things done everyday when working with bacterial pangenomes: subset, summarize, extract, visualize and store data. So, 'pagoo' is intended to facilitate these tasks as much as possible. For a description of the implemented data structure and methods, see Ferres & Iraola (2020), <doi:10.1101/2020.07.29.226951>.
Getting started
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Package details |
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| Author | Ignacio Ferres [aut, cre] (<https://orcid.org/0000-0003-0910-6568>), Gregorio Iraola [aut] (<https://orcid.org/0000-0002-6516-3404>), Institut Pasteur de Montevideo [fnd] |
| Maintainer | Ignacio Ferres <iferres@pasteur.edu.uy> |
| License | GPL-3 |
| Version | 0.3.17 |
| URL | https://iferres.github.io/pagoo/ https://github.com/iferres/pagoo |
| Package repository | View on CRAN |
| Installation |
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