pagoo: Analyze Bacterial Pangenomes in R with 'Pagoo'

Provides an encapsulated, object-oriented class system for analyzing bacterial pangenomes. For a definition of this concept, see Tettelin, et al. (2005) <doi:10.1073/pnas.0506758102>. It uses the R6 package as backend. It was designed in order to facilitate and speed-up the comparative analysis of multiple bacterial genomes, standardizing and optimizing routine tasks performed everyday. There are a handful of things done everyday when working with bacterial pangenomes: subset, summarize, extract, visualize and store data. So, 'pagoo' is intended to facilitate these tasks as much as possible. For a description of the implemented data structure and methods, see Ferres & Iraola (2020), <doi:10.1101/2020.07.29.226951>.

Package details

AuthorIgnacio Ferres [aut, cre] (<https://orcid.org/0000-0003-0910-6568>), Gregorio Iraola [aut] (<https://orcid.org/0000-0002-6516-3404>), Institut Pasteur de Montevideo [fnd]
MaintainerIgnacio Ferres <iferres@pasteur.edu.uy>
LicenseGPL-3
Version0.3.13
URL https://iferres.github.io/pagoo/ https://github.com/iferres/pagoo
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("pagoo")

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pagoo documentation built on Sept. 1, 2022, 1:07 a.m.