pagoo: Analyze Bacterial Pangenomes in R with 'Pagoo'

Provides an encapsulated, object-oriented class system for analyzing bacterial pangenomes. For a definition of this concept, see Tettelin, et al. (2005) <doi:10.1073/pnas.0506758102>. It uses the R6 package as backend. It was designed in order to facilitate and speed-up the comparative analysis of multiple bacterial genomes, standardizing and optimizing routine tasks performed everyday. There are a handful of things done everyday when working with bacterial pangenomes: subset, summarize, extract, visualize and store data. So, 'pagoo' is intended to facilitate these tasks as much as possible. For a description of the implemented data structure and methods, see Ferres & Iraola (2020), <doi:10.1101/2020.07.29.226951>.

Package details

AuthorIgnacio Ferres [aut, cre] (<>), Gregorio Iraola [aut] (<>), Institut Pasteur de Montevideo [fnd]
MaintainerIgnacio Ferres <>
Package repositoryView on CRAN
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pagoo documentation built on Sept. 1, 2022, 1:07 a.m.