load_pangenomeRDS: Load A Pagoo Pangenome

In pagoo: Analyze Bacterial Pangenomes in R with 'Pagoo'

Load A Pagoo Pangenome

Description

This function loads a pagoo pangenome from a '.RDS' file generated by the 'save_pangenomeRDS' method. Objects loaded by this functions keep their states, i.e : dropped/recovered organisms are conserved, as well as the 'core_level' setted when the object was originally saved.

Usage

load_pangenomeRDS(file, pkg, ...)

Arguments

file	The path to the pangenome '.RDS' file.
pkg	The package to use to load the object. Shouldn't be necessary to provide, but may be useful in some cases.
...	Arguments to be passed to the pagoo object. sep and core_level overwrite the values stored in the file.

Value

A PgR6MS class object, or a PgR6M object (with or without sequences, respectively).

pagoo documentation built on Nov. 19, 2022, 1:07 a.m.