API for pammtools
Piece-Wise Exponential Additive Mixed Modeling Tools for Survival Analysis
| Global functions | |
|---|---|
| %>% | Man page |
| .invert_cumu_hazard | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| GeomHazard | Man page |
| GeomStepHazard | Man page |
| GeomStepribbon | Man page |
| GeomSurv | Man page |
| add_ci | Source code |
| add_cif | Man page Source code |
| add_cif.default | Man page Source code |
| add_cif.pamm_ic | Man page Source code |
| add_counterfactual_transitions | Man page Source code |
| add_cumu_hazard | Man page Source code |
| add_cumu_hazard.default | Man page Source code |
| add_cumu_hazard.pamm_ic | Man page Source code |
| add_cumulative_boundary | Source code |
| add_delta_ci | Source code |
| add_delta_ci_cumu | Source code |
| add_delta_ci_surv | Source code |
| add_hazard | Man page Source code |
| add_hazard.default | Man page Source code |
| add_hazard.pamm_ic | Man page Source code |
| add_inspections | Man page Source code |
| add_surv_prob | Man page Source code |
| add_surv_prob.default | Man page Source code |
| add_surv_prob.pamm_ic | Man page Source code |
| add_tdc | Man page |
| add_term | Man page Source code |
| add_to_rhs | Source code |
| add_trans_ci | Man page Source code |
| add_trans_prob | Man page Source code |
| adjust_ll | Source code |
| append_ped_attr | Source code |
| arrange | Man page |
| arrange.ped | Man page Source code |
| as.data.frame.crps | Man page Source code |
| as_ped | Man page Source code |
| as_ped.data.frame | Man page Source code |
| as_ped.list | Man page Source code |
| as_ped.nested_fdf | Man page Source code |
| as_ped.pamm | Man page Source code |
| as_ped.ped | Man page Source code |
| as_ped_cr | Man page Source code |
| as_ped_ic | Man page Source code |
| as_ped_multistate | Man page Source code |
| assert_ci_supported | Source code |
| build_ic_ped | Source code |
| build_ic_ped_cr | Source code |
| calc_ci | Man page Source code |
| combine_df | Man page Source code |
| compute_cumu_diff | Man page Source code |
| concurrent | Man page |
| cumu_coef | Source code |
| cumulative | Man page Source code |
| daily | Man page |
| deduce_df | Source code |
| default_pamm_formula | Source code |
| detect_ic | Man page Source code |
| distinct | Man page |
| distinct.ped | Man page Source code |
| dplyr_verbs | Man page |
| draw_uniform_ic | Source code |
| drop_cumulative_boundary | Source code |
| drop_zero_followup | Man page Source code |
| empty_smooth_terms | Source code |
| empty_term_tibble | Source code |
| expand_cumulative | Man page |
| expand_df | Source code |
| fcumu | Man page |
| filter | Man page |
| filter.ped | Man page Source code |
| fit_strip_summarise | Source code |
| fmi_fivenum | Source code |
| fped_attr | Source code |
| from_to_pairs | Man page Source code |
| from_to_pairs.data.frame | Man page Source code |
| from_to_pairs2 | Man page Source code |
| full_join | Man page |
| full_join.ped | Man page Source code |
| geom_hazard | Man page Source code |
| geom_stephazard | Man page Source code |
| geom_stepribbon | Man page Source code |
| geom_surv | Man page Source code |
| get_Vp | Man page Source code |
| get_Vp.default | Man page Source code |
| get_Vp.gam | Man page Source code |
| get_Vp.scam | Man page Source code |
| get_cif | Man page Source code |
| get_cif.default | Man page Source code |
| get_coefs | Man page Source code |
| get_coefs.default | Man page Source code |
| get_coefs.scam | Man page Source code |
| get_cumu_coef | Man page Source code |
| get_cumu_coef.aalen | Man page Source code |
| get_cumu_coef.cox.aalen | Man page Source code |
| get_cumu_coef.gam | Man page Source code |
| get_cumu_coef.scam | Man page Source code |
| get_cumu_coef_baseline | Source code |
| get_cumu_diff | Source code |
| get_cumu_eff | Man page Source code |
| get_cumu_hazard | Man page Source code |
| get_cumulative | Man page |
| get_cut | Man page Source code |
| get_cut.default | Man page Source code |
| get_cut.list | Man page |
| get_event_types | Man page Source code |
| get_hazard | Man page Source code |
| get_hazard.default | Man page Source code |
| get_intervals | Man page Source code |
| get_intervals.default | Man page Source code |
| get_laglead | Man page Source code |
| get_laglead.data.frame | Man page Source code |
| get_laglead.default | Man page Source code |
| get_lhs_vars | Man page Source code |
| get_ll | Source code |
| get_partial_ll | Man page Source code |
| get_ped_form | Man page Source code |
| get_plotinfo | Man page Source code |
| get_rhs_vars | Man page Source code |
| get_sim_ci | Man page Source code |
| get_sim_ci_cumu | Source code |
| get_sim_ci_surv | Source code |
| get_smooth_terms | Man page Source code |
| get_surv_prob | Man page Source code |
| get_tdc_form | Man page Source code |
| get_tdc_vars | Man page Source code |
| get_term | Man page Source code |
| get_term_ind | Source code |
| get_term_legacy | Man page Source code |
| get_terms | Man page Source code |
| get_trans_prob | Source code |
| get_zvars | Source code |
| gg_cumu_eff | Man page Source code |
| gg_fixed | Man page Source code |
| gg_laglead | Man page Source code |
| gg_laglead.LL_df | Man page Source code |
| gg_laglead.default | Man page Source code |
| gg_laglead.nested_fdf | Man page Source code |
| gg_partial | Man page Source code |
| gg_partial_ll | Man page Source code |
| gg_re | Man page Source code |
| gg_slice | Man page Source code |
| gg_smooth | Man page Source code |
| gg_smooth.default | Man page Source code |
| gg_state_occupation | Man page Source code |
| gg_tensor | Man page Source code |
| ggplot2_stairstep | Source code |
| group_by | Man page |
| group_by.ped | Man page Source code |
| has_lhs | Source code |
| has_special | Man page |
| has_tdc | Man page Source code |
| has_tdc_form | Source code |
| hazard_ci | Man page Source code |
| ic_ci_draws | Source code |
| ic_cif_draws_group | Source code |
| ic_cif_fit_group | Source code |
| ic_cif_point_group | Source code |
| ic_eval_env | Source code |
| ic_event_data | Man page Source code |
| ic_group_cumsum | Source code |
| ic_pred_cache | Man page Source code |
| ic_prediction_grid | Source code |
| impute_ic_cr | Man page Source code |
| impute_ic_times | Man page Source code |
| inner_join | Man page |
| inner_join.ped | Man page Source code |
| int_info | Man page Source code |
| int_info.data.frame | Man page Source code |
| int_info.default | Man page Source code |
| int_info.pamm | Man page Source code |
| int_info.ped | Man page Source code |
| interval_censored | Man page |
| is.pamm | Man page Source code |
| is.ped | Man page Source code |
| is_categorical | Source code |
| left_join | Man page |
| left_join.ped | Man page Source code |
| make_X | Man page Source code |
| make_X.default | Man page Source code |
| make_X.gam | Man page Source code |
| make_X.scam | Man page Source code |
| make_lag_lead_mat | Man page |
| make_latency_mat | Man page |
| make_newdata | Man page Source code |
| make_newdata.default | Man page Source code |
| make_newdata.fped | Man page Source code |
| make_newdata.ped | Man page Source code |
| make_ped_dat | Source code |
| make_time_mat | Man page |
| make_z_mat | Man page |
| mi_fmi | Source code |
| mi_riv | Source code |
| modus | Man page Source code |
| mutate | Man page |
| mutate.ped | Man page Source code |
| nest_tdc | Man page Source code |
| nest_tdc.default | Man page Source code |
| nest_tdc.list | Man page Source code |
| normal_ci_multiplier | Source code |
| nuclear | Man page |
| pamm | Man page Source code |
| pamm_ic | Man page Source code |
| pamm_ic_cr | Man page Source code |
| pamm_ic_pooling | Man page |
| pammtools | Man page |
| pammtools-package | Man page |
| parse_by_level | Man page Source code |
| parse_ic_surv | Man page Source code |
| patient | Man page |
| ped_attr | Source code |
| ped_classes | Source code |
| ped_info | Man page Source code |
| ped_info.ped | Man page Source code |
| ped_internal_vars | Source code |
| plot.pamm | Man page Source code |
| pool_pamm_fits | Man page Source code |
| pool_param_fmi_table | Source code |
| pool_param_table | Source code |
| pool_smooth_fmi_table | Source code |
| pool_smooth_table | Source code |
| pooled_point | Source code |
| predictSurvProb.pamm | Man page Source code |
| prep_X | Source code |
| prep_concurrent | Man page |
| prep_concurrent.list | Man page |
| preproc_reference | Source code |
| print.pamm | Man page Source code |
| print.pamm_ic | Man page Source code |
| print.summary.pamm_ic | Man page Source code |
| re_attribute | Source code |
| reconstruct_cutpoints | Man page Source code |
| reconstruct_intlen | Man page Source code |
| refped | Source code |
| rename | Man page |
| rename.ped | Man page Source code |
| repam | Source code |
| reped | Source code |
| resolve_ic_cut | Man page Source code |
| resolve_rhs_vars | Source code |
| resolve_terms | Man page Source code |
| resolve_time_var | Source code |
| restore_prediction_attrs | Source code |
| right_join | Man page |
| right_join.ped | Man page Source code |
| row_quantile | Source code |
| rpexp | Man page |
| rubin_inflate_qoi_draws | Source code |
| sample_coefs | Man page Source code |
| sample_coefs.default | Man page Source code |
| sample_frac | Man page |
| sample_frac.ped | Man page Source code |
| sample_info | Man page Source code |
| sample_info.data.frame | Man page Source code |
| sample_info.fped | Man page Source code |
| sample_info.ped | Man page Source code |
| sample_n | Man page |
| sample_n.ped | Man page Source code |
| sanitize_ped_attributes | Source code |
| select | Man page |
| select.ped | Man page Source code |
| seq_range | Man page Source code |
| set_cumulative_boundary_values | Source code |
| sim_cumulative_ci | Source code |
| sim_hazard | Man page Source code |
| sim_hazard.default | Man page Source code |
| sim_pexp | Man page Source code |
| sim_pexp_cr | Man page |
| simdf_elra | Man page |
| slice | Man page |
| slice.ped | Man page Source code |
| smooth.construct.fdl.smooth.spec | Man page Source code |
| smooth_term_qoi | Source code |
| smooth_term_rows | Man page Source code |
| smry_cumu_vars | Source code |
| split_data | Man page Source code |
| split_data_multistate | Man page Source code |
| staph | Man page |
| status_error | Source code |
| stop_if_undergrouped_for_cumulation | Man page Source code |
| strip_pamm_fit | Man page Source code |
| summarise | Man page |
| summarise.ped | Man page Source code |
| summarize.ped | Man page |
| summary.pamm | Man page Source code |
| summary.pamm_ic | Man page Source code |
| tidy_fixed | Man page Source code |
| tidy_fixed.coxph | Man page Source code |
| tidy_fixed.gam | Man page Source code |
| tidy_fixed.scam | Man page Source code |
| tidy_re | Man page Source code |
| tidy_smooth | Man page Source code |
| tidy_smooth2d | Man page Source code |
| transition_state_table | Source code |
| transmute | Man page |
| transmute.ped | Man page Source code |
| tumor | Man page |
| unfped | Source code |
| ungroup | Man page |
| ungroup.ped | Man page Source code |
| unpam | Source code |
| unped | Source code |
| update_formula | Source code |
| validate_ic_cut_covers_events | Source code |
| warn_about_new_time_points | Man page Source code |
| warn_about_new_time_points.glm | Man page Source code |
| warn_about_new_time_points.pamm | Man page Source code |
| warn_unstable_chains | Source code |
