Man pages for pamr
Pam: Prediction Analysis for Microarrays
| khan | Khan microarray data |
| pamr.adaptthresh | A function to adaptive choose threshold scales, for use in... |
| pamr.batchadjust | A function to mean-adjust microarray data by batches |
| pamr.confusion | A function giving a table of true versus predicted values,... |
| pamr.confusion.survival | Compute confusin matrix from pamr survival fit |
| pamr.cv | A function to cross-validate the nearest shrunken centroid... |
| pamr.decorrelate | A function to decorrelate (adjust) the feature matrix with... |
| pamr.fdr | A function to estimate false discovery rates for the nearest... |
| pamr.geneplot | A function to plot the genes that surive the thresholding... |
| pamr.indeterminate | A function that takes estimate class probabilities and... |
| pamr.internal | Internal pamr functions |
| pamr.listgenes | A function to list the genes that survive the thresholding,... |
| pamr.makeclasses | A function to interactively define classes from a clustering... |
| pamr.menu | A function that interactively leads the user through a PAM... |
| pamr.plotcen | A function to plot the shrunken class centroids, from the... |
| pamr.plotcv | A function to plot the cross-validated error curves from the... |
| pamr.plotcvprob | A function to plot the cross-validated sample probabilities... |
| pamr.plotfdr | A function to plot the FDR curve from the nearest shrunken... |
| pamr.plotstrata | A function to plot the survival curves in each Kaplan Meier... |
| pamr.plotsurvival | A function to plots Kaplan-Meier curves stratified by a group... |
| pamr.predict | A function giving prediction information, from a nearest... |
| pamr.predictmany | A function giving prediction information for many threshold... |
| pamr.surv.to.class2 | A function to assign observations to categories, based on... |
| pamr.test.errors.surv.compute | A function giving a table of true versus predicted values,... |
| pamr.train | A function to train a nearest shrunken centroid classifier |
