pamr.plotfdr: A function to plot the FDR curve from the nearest shrunken...
In pamr: Pam: Prediction Analysis for Microarrays

Description Usage Arguments Details Author(s) Examples

A function to plot the FDR curve the nearest shrunken centroid classifier

1	pamr.plotfdr(fdrfit, call.win.metafile = FALSE)

`fdrfit`	The result of a call to pamr.fdr
`call.win.metafile`	Used by Excel interface

pamr.plotfdr plots the FDR curves from nearest shrunken centroid classifier. The median FDR (solid line) and upper 90 percentile (broken line) are shown

Trevor Hastie,Robert Tibshirani, Balasubramanian Narasimhan, and Gilbert Chu

suppressWarnings(RNGversion("3.5.0"))
set.seed(120)
x <- matrix(rnorm(1000*20),ncol=20)
y <- sample(c(1:2),size=20,replace=TRUE)
x[1:50,y==2]=x[1:50,y==2]+3
mydata <- list(x=x,y=y)
mytrain <-   pamr.train(mydata)
myfdr <-  pamr.fdr(mytrain, mydata)
pamr.plotfdr(myfdr)