Man pages for pathviewr
Wrangle, Analyze, and Visualize Animal Movement Data
| as_viewr | Convert data from another format into a viewr object |
| bind_viewr_objects | Bind viewr objects |
| calc_min_dist_box | Calculate minimum distance to lateral and end walls in a... |
| calc_min_dist_v | Calculate minimum distance to lateral and end walls in a... |
| clean_by_span | Remove file_sub_traj entries that do not span the full region... |
| clean_viewr | All-in-one function to clean imported objects |
| clean_viewr_batch | Batch clean viewr files |
| deg_2_rad | Convert degrees to radians |
| exclude_by_velocity | Remove trajectories entirely, based on velocity thresholds |
| fill_traj_gaps | Interpolate gaps within trajectories |
| find_curve_elbow | Find the "elbow" of a curve. |
| gather_tunnel_data | Gather data columns into key-value pairs |
| get_2d_angle | Compute an angle in 2D space |
| get_3d_angle | Compute an angle in 3D space |
| get_3d_cross_prod | Compute the cross product of two 3D vectors |
| get_dist_point_line | Compute distance between a point and a line |
| get_full_trajectories | Retain trajectories that span a selected region of interest |
| get_header_viewr | Extract header info from imported viewr object |
| get_sf | Estimate the spatial frequency of visual stimuli from the... |
| get_traj_velocities | Recompute trajectory-specific velocities |
| get_velocity | Get instantaneous velocity for subjects |
| get_vis_angle | Estimate visual angles from a subject's perspective in an... |
| import_and_clean_batch | Batch import and clean files |
| import_and_clean_viewr | Import + clean_viewr() |
| import_batch | Batch import of files for either Motive or Flydra (but not a... |
| insert_treatments | Inserts treatment and experiment information |
| pathviewr-package | pathviewr: Wrangle, Analyze, and Visualize Animal Movement... |
| pipe | Pipe operator |
| plot_by_subject | Plot trajectories and density plots of position by subject |
| plot_viewr_trajectories | Plot each trajectory within a viewr object |
| quick_separate_trajectories | Quick version of separate_trajectories() |
| rad_2_deg | Convert radians to degrees |
| read_flydra_mat | Import data from a MAT file exported from Flydra software |
| read_motive_csv | Import data from a CSV exported from Optitrack's Motive... |
| redefine_tunnel_center | "Center" the tunnel data, i.e. translation but no rotation |
| relabel_viewr_axes | Relabel the dimensions as length, width, and height |
| remove_duplicate_frames | Remove any duplicates or aliased frames within trajectories |
| remove_vel_anomalies | Remove any rows which show sharp shifts in velocity that are... |
| rename_viewr_characters | Rename subjects in the data via pattern detection |
| rescale_tunnel_data | Rescale position data within a 'viewr' object |
| rm_by_trajnum | Remove subjects by trajectory number |
| rotate_tunnel | Rotate a tunnel so that perches are approximately aligned |
| section_tunnel_by | Bin data along a specified axis |
| select_x_percent | Select a region of interest within the tunnel |
| separate_trajectories | Separate rows of data into separately labeled trajectories. |
| set_traj_frametime | Redefine frames and time stamps on a per-trajectory basis |
| standardize_tunnel | Rotate and center a tunnel based on landmarks |
| trim_tunnel_outliers | Trim out artifacts and other outliers from the extremes of... |
| visualize_frame_gap_choice | Visualize the consequence of using various max_frame_gap... |
