R/data.R

In pathwayTMB: Pathway Based Tumor Mutational Burden

#' @title gene_path, the pathways geneset
#' @description gene_path, a list of KEGG Non-metabolic pathways geneset.
#' @usage gene_path
"gene_path"



#' @title genesmbol, the coding genes' length
#' @description  genesmbol,a list of coding genes' length, generated by 'get_gene_length'.
#' @usage genesmbol
"genesmbol"



#' @title final_character, the example's final signature
#' @description final_character, a potential marker for cancer prognostic and immunotherapy, generated by 'get_final_signature'
#' @usage final_character
"final_character"


#' @title sur, the samples' survival data
#' @description sur, a nx2 data frame, the samples' survival data
#' @usage sur
"sur"


#' @title mut_matrix, mutations matrix
#' @description mut_matrix, the mutations matrix,generated by `get_mut_matrix`
#' @usage mut_matrix
"mut_matrix"

#' @title PTMB_matrix, the Pathway-based Tumor Mutational Burden matrix
#' @description PTMB_matrix, the pathway tumor mutation burden matrix,generated by`get_PTMB`
#' @usage PTMB_matrix
"PTMB_matrix"