pbatR: P2BAT

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This package provides data analysis via the pbat program, and an alternative internal implementation of the power calculations via simulation only. For analysis, this package provides a frontend to the PBAT software, automatically reading in the output from the pbat program and displaying the corresponding figure when appropriate (i.e. PBAT-logrank). It includes support for multiple processes and clusters. For analysis, users must download PBAT (developed by Christoph Lange) and accept it's license, available on the PBAT webpage. Both the data analysis and power calculations have command line and graphical interfaces using tcltk.

Author
Thomas Hoffmann <tjhoffm@gmail.com>, with contributions from Christoph Lange <clange@hsph.harvard.edu>
Date of publication
2013-03-30 17:31:14
Maintainer
Thomas Hoffmann <tjhoffm@gmail.com>
License
GPL
Version
2.2-9
URLs

View on CRAN

Man pages

affectionPhe
Affection Phenotype Object
c2bat
C2BAT
cluster
Cluster result functions
cped
Phenotype Object
obfuscate
Obfuscating Pedigree and Phenotype Files
pbat
PBAT Graphical and Command Line Interface
pbat.clean
Cleaning pbat(), pbat.last(), pbat.m() output.
pbat.help
Help and Reporting Information
pbat.set
Set Pbat Parameters
pbat.status
PBAT Status of Run
pbat.work
pbatRwork Temp Directory
ped
Pedigree Object
phe
Phenotype Object
power
Power Exploration
summary
'pbat' Object Generic Routines
top
top
write.pbat.csv
Saving 'pbat' Object

Files in this package

pbatR
pbatR/MD5
pbatR/src
pbatR/src/wait.cpp
pbatR/src/thmalloc.h
pbatR/src/sh2win.cpp
pbatR/src/random.h
pbatR/src/random.cpp
pbatR/src/powerSim.cpp
pbatR/src/kludge.cpp
pbatR/src/fbatDist.h
pbatR/src/fbatDist.cpp
pbatR/src/data.cpp
pbatR/src/Makevars.win
pbatR/man
pbatR/man/write.pbat.csv.Rd
pbatR/man/top.Rd
pbatR/man/summary.Rd
pbatR/man/power.Rd
pbatR/man/phe.Rd
pbatR/man/ped.Rd
pbatR/man/pbat.work.Rd
pbatR/man/pbat.status.Rd
pbatR/man/pbat.set.Rd
pbatR/man/pbat.help.Rd
pbatR/man/pbat.clean.Rd
pbatR/man/pbat.Rd
pbatR/man/obfuscate.Rd
pbatR/man/cped.Rd
pbatR/man/cluster.Rd
pbatR/man/c2bat.Rd
pbatR/man/affectionPhe.Rd
pbatR/R
pbatR/R/wait.R
pbatR/R/version.R
pbatR/R/top.R
pbatR/R/strings.R
pbatR/R/powerGUI.R
pbatR/R/powerConversions.R
pbatR/R/power.R
pbatR/R/plot.pedigree.R
pbatR/R/phe.R
pbatR/R/ped.R
pbatR/R/pbatGUI.R
pbatR/R/pbat.m.R
pbatR/R/pbat.io.R
pbatR/R/pbat.dir.R
pbatR/R/pbat.R
pbatR/R/obfuscate.R
pbatR/R/metadata.R
pbatR/R/message.R
pbatR/R/help.R
pbatR/R/getPaths.R
pbatR/R/extras.R
pbatR/R/createCommandfile.R
pbatR/R/cped.R
pbatR/R/clean.R
pbatR/R/c2bat.R
pbatR/R/attrTest.R
pbatR/NAMESPACE
pbatR/DESCRIPTION