cluster: Cluster result functions

In pbatR: Pedigree/Family-Based Genetic Association Tests Analysis and Power

Cluster result functions

Description

Options when 'clusterRefresh' has been set to 0 (so that the current process is batched). See pbat.set for details.

is.finished() returns if PBAT execution has terminated.

pbat.load() loads in PBAT output.

pbat.concatenate() concatenates output files (without reading them into an R object).

Usage

is.finished(pbatObj=NULL, clean=TRUE)
pbat.load(pbatObj=NULL)
pbat.concatenate(pbatObj=NULL, 
  filename="myResults.txt", clean=FALSE)

Arguments

pbatObj	'pbat' object (result of pbat.m, pbat.obj, pbat.files). If NULL / left empty, then the results are taken from what was run in the GUI interface.
clean	pbat.load: If TRUE it will remove intermediate files that setup the job submission interface (but no other results, and not the command-files sent to pbat); see also pbat.clean. If FALSE, nothing else is done. NOTE, when TRUE (which is the default), if you run this more than once, you will get TRUE only once, and then FALSE the rest of the times. pbat.concatenate: If clean is TRUE, then output that went into the concatenated file will be deleted. Default is FALSE, as this has been a primary area of continual changes in PBAT, and so you may not want to do this until you have checked the output.
filename	output filename

See Also

pbat.set

pbat

pbatR documentation built on May 29, 2024, 10:27 a.m.