pcadapt: Fast Principal Component Analysis for Outlier Detection

Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <DOI:10.1093/molbev/msaa053>.

Getting started

Package details

AuthorKeurcien Luu [aut], Michael Blum [aut], Florian Privé [aut, cre], Eric Bazin [ctb], Nicolas Duforet-Frebourg [ctb]
MaintainerFlorian Privé <florian.prive.21@gmail.com>
LicenseGPL (>= 2)
Version4.3.5
URL https://github.com/bcm-uga/pcadapt
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("pcadapt")

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pcadapt documentation built on Aug. 29, 2023, 5:07 p.m.