Files in pcadapt
Fast Principal Component Analysis for Outlier Detection
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/pcadaptRead.R
R/vcfConverter.R
R/pcadaptUtils.R
R/plotUtils.R
R/bed2matrix.R
R/iram.R
R/writebed.R
R/pcadapt.R
src/nb-na.cpp
src/linear-regression.cpp
src/Makevars
src/af.cpp
src/RcppExports.cpp
src/writebed.cpp
src/bed-acc-xptr.cpp
src/clumping.cpp
src/bed2matrix.cpp
src/prodMat.cpp
src/pedUtils.cpp
src/vcfUtils.cpp
inst/CITATION
inst/WORDLIST
inst/include/pcadapt/bed-acc.h
inst/include/pcadapt/mat-acc.h
inst/testdata/full.rds
inst/testdata/novar.bed
inst/testdata/novar.fam
inst/testdata/pcadapt_v3.rds
inst/testdata/novar.bim
inst/testdata/to-compare.rds
inst/extdata/geno3pops.lfmm.bed
inst/extdata/geno3pops.pcadapt
inst/extdata/geno3pops.bim
inst/extdata/geno3pops.pcadapt.bed
inst/extdata/pool3pops
inst/extdata/geno3pops.fam
inst/extdata/missing.pcadapt
inst/extdata/missing.fam
inst/extdata/SSMPG2017.rds
inst/extdata/geno3pops.bed
inst/extdata/geno3pops.lfmm
inst/extdata/missing.bed
inst/extdata/missing.bim
inst/extdata/missing.lfmm
inst/shiny-examples/app-pcadapt/ui.R
inst/shiny-examples/app-pcadapt/global.R
inst/shiny-examples/app-pcadapt/server.R
inst/shiny-examples/app-pcadapt/www/busy.js
inst/shiny-examples/app-pcadapt/www/style.css
inst/shiny-examples/app-pcadapt/ui/tab-local-adaptation.R
inst/shiny-examples/app-pcadapt/ui/tab-manhattan.R
inst/shiny-examples/app-pcadapt/ui/tab-introgression.R
inst/shiny-examples/app-pcadapt/ui/tab-screeplot.R
inst/shiny-examples/app-pcadapt/ui/tab-rcommand.R
inst/shiny-examples/app-pcadapt/ui/tab-pca.R
inst/shiny-examples/app-pcadapt/ui/tab-outlier.R
inst/shiny-examples/app-pcadapt/ui/tab-histogram.R
inst/shiny-examples/app-pcadapt/ui/helpers.R
inst/shiny-examples/app-pcadapt/server/tab-manhattan.R
inst/shiny-examples/app-pcadapt/server/tab-screeplot.R
inst/shiny-examples/app-pcadapt/server/tab-rcommand.R
inst/shiny-examples/app-pcadapt/server/tab-pca.R
inst/shiny-examples/app-pcadapt/server/tab-outlier.R
inst/shiny-examples/app-pcadapt/server/tab-histogram.R
inst/shiny-examples/app-pcadapt/rsconnect/shinyapps.io/keurcien/app-pcadapt.dcf
man/read.pcadapt.Rd
man/writeBed.Rd
man/vcf2pcadapt.Rd
man/score_plot.Rd
man/get.score.color.Rd
man/ped2pcadapt.Rd
man/bed2matrix.Rd
man/get.pc.Rd
man/print_convert.Rd
man/run.pcadapt.Rd
man/get_statistics.Rd
man/plot.pcadapt.Rd
man/get.pop.names.Rd
man/manhattan_plot.Rd
man/pcadapt.Rd
man/vcf_convert.Rd
man/qq_plot.Rd
man/hist_plot.Rd
man/scree_plot.Rd
