vcf_convert: Convert vcfR genotype matrices
In pcadapt: Fast Principal Component Analysis for Outlier Detection
vcf_convert R Documentation
Convert vcfR genotype matrices
Description
vcf_convert converts outputs of extract.gt to the format
pcadapt.
Usage
vcf_convert(string_geno, output, allele_sep)
Arguments
string_geno
a genotype matrix extracted from a VCF file with 'vcfR'.
output
a character string indicating the name of the output file.
allele_sep
a vector of characters indicating what delimiters are used
to separate alleles.
pcadapt documentation built on Aug. 29, 2023, 5:07 p.m.
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| vcf_convert | R Documentation |
Convert vcfR genotype matrices
Description
vcf_convert converts outputs of extract.gt to the format
pcadapt.
Usage
vcf_convert(string_geno, output, allele_sep)
Arguments
string_geno |
a genotype matrix extracted from a VCF file with 'vcfR'. |
output |
a character string indicating the name of the output file. |
allele_sep |
a vector of characters indicating what delimiters are used to separate alleles. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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