pec: Prediction Error Curves for Risk Prediction Models in Survival Analysis

Share:

Validation of risk predictions obtained from survival models and competing risk models based on censored data using inverse weighting and cross-validation.

Author
Thomas A. Gerds
Date of publication
2016-05-14 23:19:27
Maintainer
Thomas A. Gerds <tag@biostat.ku.dk>
License
GPL (>= 2)
Version
2.4.9

View on CRAN

Man pages

calPlot
Calibration plots for right censored data
cindex
Concordance index for right censored survival time data
cost
Copenhagen Stroke Study
coxboost
Formula interface for function 'CoxBoost' of package...
crps
Summarizing prediction error curves
GBSG2
German Breast Cancer Study Group 2
ipcw
Estimation of censoring probabilities
Pbc3
Pbc3 data
pec
Prediction error curves
pecCforest
S3-wrapper function for cforest from the party package
pecCtree
S3-Wrapper for ctree.
pecRpart
Predict survival based on rpart tree object
plot.calibrationPlot
Plot objects obtained with 'calPlot'
plot.pec
Plotting prediction error curves
plotPredictEventProb
Plotting predicted survival curves.
plotPredictSurvProb
Plotting predicted survival curves.
predictEventProb
Predicting event probabilities (cumulative incidences) in...
predictLifeYearsLost
Predicting life years lost (cumulative cumulative incidences)...
predictRestrictedMeanTime
Predicting restricted mean time
predictSurvProb
Predicting survival probabilities
print.pec
Printing a 'pec' (prediction error curve) object.
R2
Explained variation for survival models
reclass
Retrospective risk reclassification table
resolvesplitMethod
Resolve the splitMethod for estimation of prediction...
selectCox
Backward variable selection in the Cox regression model
selectFGR
Stepwise variable selection in the Fine & Gray regression...
simCost
Simulate COST alike data
Special
Drawing bootstrapped cross-validation curves and the .632 or...
threecity
threecity data
wallyPlot
Wally plots to assess calibration of a risk or survival...

Files in this package

pec
pec/inst
pec/inst/CITATION
pec/tests
pec/tests/testthat
pec/tests/testthat/pec-loop.R
pec/src
pec/src/pec.c
pec/src/ccr.c
pec/src/cindex.c
pec/src/brier_score.c
pec/src/SNull.c
pec/src/auc.c
pec/src/pecResiduals.c
pec/src/survest_cox_aalen.c
pec/NAMESPACE
pec/data
pec/data/Pbc3.csv.gz
pec/data/cost.rda
pec/data/threecity.csv.gz
pec/data/GBSG2.csv.gz
pec/R
pec/R/testResiduals.R
pec/R/print.vandeWielTest.R
pec/R/predictSurvProb.R
pec/R/plot.pec.R
pec/R/predictEventProb.coxboost.R
pec/R/print.R2.R
pec/R/calPlot.R
pec/R/summary.Cindex.R
pec/R/pec-package.R
pec/R/crps.R
pec/R/kFoldCrossValidation.R
pec/R/bootstrapCrossValidation.R
pec/R/CindexBootstrapCrossValidation.R
pec/R/allComparisons.R
pec/R/pec.R
pec/R/print.Cindex.R
pec/R/summary.confScoreSurv.R
pec/R/plot.CiCindex.R
pec/R/predictRestrictedMeanTime.R
pec/R/ipcw.R
pec/R/R2.R
pec/R/predictSurvProb.ctree.R
pec/R/plot.calibrationPlot.R
pec/R/predictEventProb.R
pec/R/predictLandmark.R
pec/R/CindexKFoldCrossValidation.R
pec/R/predictSurvProb.pseudoForest.R
pec/R/pseudo.kFoldCrossValidation.R
pec/R/predictSurvProb.cforest.R
pec/R/print.calibrationPlot.R
pec/R/checkModels.R
pec/R/summary.pec.R
pec/R/survest.cox.aalen.R
pec/R/print.ConfScoreSurv.R
pec/R/resolveSplitMethod.R
pec/R/selectCox.R
pec/R/predictSurvProb.penfitS3.R
pec/R/print.riskReclassification.R
pec/R/print.method.R
pec/R/ConfScoreSurv.R
pec/R/plotPredictSurvProb.R
pec/R/predictSurvProb.FastBw.R
pec/R/ConfInt.Cindex.R
pec/R/print.crps.R
pec/R/baselineHazard.coxph.R
pec/R/plot.Cindex.R
pec/R/plot.riskReclassification.R
pec/R/predictEventProb.pseudoForest.R
pec/R/plotPredictEventProb.R
pec/R/simCost.R
pec/R/internalTalk.R
pec/R/predictLifeYearsLost.R
pec/R/print.splitMethod.R
pec/R/predictEventProb.selectFGR.R
pec/R/pseudoPecMethods.R
pec/R/survest.aalen.R
pec/R/reclass.R
pec/R/cindex.R
pec/R/plot.confScoreSurv.R
pec/R/Dint.R
pec/R/ibs.R
pec/R/print.IPCW.R
pec/R/pseudo.bootstrapCrossValidation.R
pec/R/print.pec.R
pec/R/print.multiSplitTest.R
pec/R/marginal.prodlim.R
pec/R/wallyPlot.R
pec/R/Special.R
pec/R/internalReevalFit.R
pec/MD5
pec/README
pec/DESCRIPTION
pec/man
pec/man/Special.Rd
pec/man/crps.Rd
pec/man/plot.pec.Rd
pec/man/predictEventProb.Rd
pec/man/GBSG2.Rd
pec/man/threecity.Rd
pec/man/cost.Rd
pec/man/plotPredictSurvProb.Rd
pec/man/pecCtree.Rd
pec/man/calPlot.Rd
pec/man/reclass.Rd
pec/man/predictRestrictedMeanTime.Rd
pec/man/wallyPlot.Rd
pec/man/resolvesplitMethod.Rd
pec/man/plotPredictEventProb.Rd
pec/man/simCost.Rd
pec/man/R2.Rd
pec/man/selectFGR.Rd
pec/man/selectCox.Rd
pec/man/pec.Rd
pec/man/predictSurvProb.Rd
pec/man/print.pec.Rd
pec/man/Pbc3.Rd
pec/man/cindex.Rd
pec/man/predictLifeYearsLost.Rd
pec/man/pecCforest.Rd
pec/man/pecRpart.Rd
pec/man/ipcw.Rd
pec/man/coxboost.Rd
pec/man/plot.calibrationPlot.Rd