pec: Prediction Error Curves for Risk Prediction Models in Survival Analysis

Validation of risk predictions obtained from survival models and competing risk models based on censored data using inverse weighting and cross-validation.

AuthorThomas A. Gerds
Date of publication2016-05-14 23:19:27
MaintainerThomas A. Gerds <tag@biostat.ku.dk>
LicenseGPL (>= 2)
Version2.4.9

View on CRAN

Man pages

calPlot: Calibration plots for right censored data

cindex: Concordance index for right censored survival time data

cost: Copenhagen Stroke Study

coxboost: Formula interface for function 'CoxBoost' of package...

crps: Summarizing prediction error curves

GBSG2: German Breast Cancer Study Group 2

ipcw: Estimation of censoring probabilities

Pbc3: Pbc3 data

pec: Prediction error curves

pecCforest: S3-wrapper function for cforest from the party package

pecCtree: S3-Wrapper for ctree.

pecRpart: Predict survival based on rpart tree object

plot.calibrationPlot: Plot objects obtained with 'calPlot'

plot.pec: Plotting prediction error curves

plotPredictEventProb: Plotting predicted survival curves.

plotPredictSurvProb: Plotting predicted survival curves.

predictEventProb: Predicting event probabilities (cumulative incidences) in...

predictLifeYearsLost: Predicting life years lost (cumulative cumulative incidences)...

predictRestrictedMeanTime: Predicting restricted mean time

predictSurvProb: Predicting survival probabilities

print.pec: Printing a 'pec' (prediction error curve) object.

R2: Explained variation for survival models

reclass: Retrospective risk reclassification table

resolvesplitMethod: Resolve the splitMethod for estimation of prediction...

selectCox: Backward variable selection in the Cox regression model

selectFGR: Stepwise variable selection in the Fine & Gray regression...

simCost: Simulate COST alike data

Special: Drawing bootstrapped cross-validation curves and the .632 or...

threecity: threecity data

wallyPlot: Wally plots to assess calibration of a risk or survival...

Files in this package

pec
pec/inst
pec/inst/CITATION
pec/tests
pec/tests/testthat
pec/tests/testthat/pec-loop.R
pec/src
pec/src/pec.c
pec/src/ccr.c
pec/src/cindex.c
pec/src/brier_score.c
pec/src/SNull.c
pec/src/auc.c
pec/src/pecResiduals.c
pec/src/survest_cox_aalen.c
pec/NAMESPACE
pec/data
pec/data/Pbc3.csv.gz
pec/data/cost.rda
pec/data/threecity.csv.gz
pec/data/GBSG2.csv.gz
pec/R
pec/R/testResiduals.R pec/R/print.vandeWielTest.R pec/R/predictSurvProb.R pec/R/plot.pec.R pec/R/predictEventProb.coxboost.R pec/R/print.R2.R pec/R/calPlot.R pec/R/summary.Cindex.R pec/R/pec-package.R pec/R/crps.R pec/R/kFoldCrossValidation.R pec/R/bootstrapCrossValidation.R pec/R/CindexBootstrapCrossValidation.R pec/R/allComparisons.R pec/R/pec.R pec/R/print.Cindex.R pec/R/summary.confScoreSurv.R pec/R/plot.CiCindex.R pec/R/predictRestrictedMeanTime.R pec/R/ipcw.R pec/R/R2.R pec/R/predictSurvProb.ctree.R pec/R/plot.calibrationPlot.R pec/R/predictEventProb.R pec/R/predictLandmark.R pec/R/CindexKFoldCrossValidation.R pec/R/predictSurvProb.pseudoForest.R pec/R/pseudo.kFoldCrossValidation.R pec/R/predictSurvProb.cforest.R pec/R/print.calibrationPlot.R pec/R/checkModels.R pec/R/summary.pec.R pec/R/survest.cox.aalen.R pec/R/print.ConfScoreSurv.R pec/R/resolveSplitMethod.R pec/R/selectCox.R pec/R/predictSurvProb.penfitS3.R pec/R/print.riskReclassification.R pec/R/print.method.R pec/R/ConfScoreSurv.R pec/R/plotPredictSurvProb.R pec/R/predictSurvProb.FastBw.R pec/R/ConfInt.Cindex.R pec/R/print.crps.R pec/R/baselineHazard.coxph.R pec/R/plot.Cindex.R pec/R/plot.riskReclassification.R pec/R/predictEventProb.pseudoForest.R pec/R/plotPredictEventProb.R pec/R/simCost.R pec/R/internalTalk.R pec/R/predictLifeYearsLost.R pec/R/print.splitMethod.R pec/R/predictEventProb.selectFGR.R pec/R/pseudoPecMethods.R pec/R/survest.aalen.R pec/R/reclass.R pec/R/cindex.R pec/R/plot.confScoreSurv.R pec/R/Dint.R pec/R/ibs.R pec/R/print.IPCW.R pec/R/pseudo.bootstrapCrossValidation.R pec/R/print.pec.R pec/R/print.multiSplitTest.R pec/R/marginal.prodlim.R pec/R/wallyPlot.R pec/R/Special.R pec/R/internalReevalFit.R
pec/MD5
pec/README
pec/DESCRIPTION
pec/man
pec/man/Special.Rd pec/man/crps.Rd pec/man/plot.pec.Rd pec/man/predictEventProb.Rd pec/man/GBSG2.Rd pec/man/threecity.Rd pec/man/cost.Rd pec/man/plotPredictSurvProb.Rd pec/man/pecCtree.Rd pec/man/calPlot.Rd pec/man/reclass.Rd pec/man/predictRestrictedMeanTime.Rd pec/man/wallyPlot.Rd pec/man/resolvesplitMethod.Rd pec/man/plotPredictEventProb.Rd pec/man/simCost.Rd pec/man/R2.Rd pec/man/selectFGR.Rd pec/man/selectCox.Rd pec/man/pec.Rd pec/man/predictSurvProb.Rd pec/man/print.pec.Rd pec/man/Pbc3.Rd pec/man/cindex.Rd pec/man/predictLifeYearsLost.Rd pec/man/pecCforest.Rd pec/man/pecRpart.Rd pec/man/ipcw.Rd pec/man/coxboost.Rd pec/man/plot.calibrationPlot.Rd

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