pedantics: Functions to facilitate power and sensitivity analyses for genetic studies of natural populations

Contains functions for sensitivity and power analysis, for calculating statistics describing pedigrees from wild populations, and for viewing pedigrees

Author
Michael Morrissey
Date of publication
2014-01-23 12:49:51
Maintainer
Michael Morrissey <michael.morrissey@st-andrews.ac.uk>
License
GPL-2 | GPL-3
Version
1.5

View on CRAN

Man pages

drawPedigree
Produce a graphical representation of a pedigree
fixPedigree
Manipulating pedigrees to prepare them for requirements of...
fpederr
Simulates a pedigree with errors and missing data from a...
genomesim
A function to simulate QTL and/or SNP data.
gryphons
Example dataset for pedantics examples and titorial
makePedigreeFactor
Converts a numeric pedigee to a pedigree with factors
makePedigreeNumeric
Converts a pedigree with individuals specified as factors to...
microsim
Simulates microsatellite data across a pedigree.
pedantics-package
Tools to facilitate quantitative genetic studies of natural...
pedigreeStats
Calculates a range of statistics of pedigrees.
pedStatSummary
Post-processes output from pedigreeStats
phensim
A function to simulated phenotypic data
rpederr
Permutes a pedigree to create a plausible complete pedigree
rpederrBird
Permutes a bird pedigree to create a plausible complete...

Files in this package

pedantics
pedantics/inst
pedantics/inst/pedanticsTutorial.pdf
pedantics/src
pedantics/src/pedantics.cc
pedantics/NAMESPACE
pedantics/data
pedantics/data/gryphons.tab.gz
pedantics/R
pedantics/R/rpederr.R
pedantics/R/pedigreeStats.R
pedantics/R/drawPedigree.R
pedantics/R/makePedigreeFactor.R
pedantics/R/genomesim.R
pedantics/R/rpederrBird.R
pedantics/R/pedStatSummary.R
pedantics/R/fixPedigree.R
pedantics/R/makePedigreeNumeric.R
pedantics/R/phensim.R
pedantics/R/fpederr.R
pedantics/R/microsim.R
pedantics/MD5
pedantics/DESCRIPTION
pedantics/man
pedantics/man/genomesim.Rd
pedantics/man/rpederrBird.Rd
pedantics/man/gryphons.Rd
pedantics/man/microsim.Rd
pedantics/man/phensim.Rd
pedantics/man/rpederr.Rd
pedantics/man/pedigreeStats.Rd
pedantics/man/pedStatSummary.Rd
pedantics/man/drawPedigree.Rd
pedantics/man/pedantics-package.Rd
pedantics/man/fpederr.Rd
pedantics/man/makePedigreeNumeric.Rd
pedantics/man/makePedigreeFactor.Rd
pedantics/man/fixPedigree.Rd