pedigree: Pedigree functions

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Pedigree related functions

Author
Albart Coster [aut, cre]
Date of publication
2013-11-03 18:33:22
Maintainer
Albart Coster <albart@dairyconsult.nl>
License
GPL (>= 2)
Version
1.4

View on CRAN

Man pages

add.Inds
Function to add missing individuals to a pedigree
blup
Function to calculate breeding values using an animal model
calcG
Function to calculate a relationship matrix from marker data...
calcInbreeding
Calculates inbreeding coefficients for individuals in a...
countGen
Count generation number for each individual in a pedigree.
countOff
Function that counts the number of offspring (and following...
gblup
Function to calculate breeding values using an animal model...
makeA
Makes the A matrix for a part of a pedigree
makeAinv
Makes inverted A matrix for a pedigree
orderPed
Orders a pedigree
pedigree-package
Package to deal with pedigree data
trimPed
Function to trim a pedigree based on available data

Files in this package

pedigree
pedigree/src
pedigree/src/Pedigree.h
pedigree/src/Pedigree.cpp
pedigree/NAMESPACE
pedigree/R
pedigree/R/OldcountGen.R
pedigree/R/read.Hendixpedigree.R
pedigree/R/drivers.r
pedigree/R/blup.R
pedigree/R/gblup.R
pedigree/R/add.Inds.R
pedigree/R/read.IPGpedigree.R
pedigree/MD5
pedigree/DESCRIPTION
pedigree/ChangeLog
pedigree/man
pedigree/man/countGen.Rd
pedigree/man/calcG.Rd
pedigree/man/gblup.Rd
pedigree/man/makeA.Rd
pedigree/man/add.Inds.Rd
pedigree/man/blup.Rd
pedigree/man/calcInbreeding.Rd
pedigree/man/makeAinv.Rd
pedigree/man/pedigree-package.Rd
pedigree/man/trimPed.Rd
pedigree/man/orderPed.Rd
pedigree/man/countOff.Rd