pedtools: Creating and Working with Pedigrees and Marker Data

A comprehensive collection of tools for creating, manipulating and visualising pedigrees and genetic marker data. Pedigrees can be read from text files or created on the fly with built-in functions. A range of utilities enable modifications like adding or removing individuals, breaking loops, and merging pedigrees. Pedigree plots are produced by wrapping the plotting functionality of the 'kinship2' package. A Shiny app for creating pedigrees, based on 'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>. 'pedtools' is the hub of the 'ped suite', a collection of packages for pedigree analysis. A detailed presentation of the 'ped suite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).

Package details

AuthorMagnus Dehli Vigeland [aut, cre] (<https://orcid.org/0000-0002-9134-4962>)
MaintainerMagnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
LicenseGPL-3
Version1.0.1
URL https://github.com/magnusdv/pedtools https://magnusdv.github.io/pedsuite/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("pedtools")

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pedtools documentation built on June 22, 2021, 9:06 a.m.