addAllele | Add allele |
as.data.frame.ped | Convert ped to data.frame |
as_kinship2_pedigree | Convert pedigree to kinship2 format |
as.matrix.ped | Convert 'ped' to matrix |
as.ped | Conversions to ped objects |
connectedComponents | Connected pedigree components |
distributeMarkers | Distribute markers evenly along a set of chromosomes |
famid | Family identifier |
founderInbreeding | Inbreeding coefficients of founders |
freqDatabase | Allele frequency database |
getAlleles | Allele matrix manipulation |
getComponent | Pedigree component |
getGenotypes | Genotype matrix |
getMap | Tabulate marker positions |
getSex | Get or set the sex of pedigree members |
inbreedingLoops | Pedigree loops |
internalplot | Internal plot methods |
is.marker | Test if something is a marker |
is.ped | Is an object a 'ped' object? |
locusAttributes | Get or set locus attributes |
marker | Marker objects |
marker_attach | Attach markers to pedigrees |
marker_getattr | Get marker attributes |
marker_inplace | Set marker attributes |
marker_prop | Marker properties |
marker_select | Select or remove attached markers |
marker_setattr | Set marker attributes |
maskPed | Mask and unmask pedigree datasets |
mendelianCheck | Check for Mendelian errors |
mergePed | Merge two pedigrees |
newMarker | Internal marker constructor |
newPed | Internal ped constructor |
nMarkers | The number of markers attached to a pedigree |
ped | Pedigree construction |
ped_basic | Create simple pedigrees |
ped_complex | Complex pedigree structures |
ped_internal | Internal ordering of pedigree members |
ped_modify | Add/remove pedigree members |
ped_subgroups | Pedigree subgroups |
pedtools-package | pedtools: Creating and Working with Pedigrees and Marker Data |
ped_utils | Pedigree utilities |
plot.ped | Plot pedigree |
plotPedList | Plot a collection of pedigrees. |
print.nucleus | S3 methods |
print.ped | Printing pedigrees |
randomPed | Random pedigree |
readPed | Read a pedigree from file |
relabel | Get or modify pedigree labels |
setMutmod | Set a mutation model |
setSNPs | Attach SNP loci to a pedigree |
sortGenotypes | Sort the alleles in each genotype |
transferMarkers | Transfer marker data |
validatePed | Pedigree errors |
writePed | Write a pedigree to file |
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