Man pages for pedtools
Creating and Working with Pedigrees and Marker Data
| addAllele | Add allele |
| as.data.frame.ped | Convert ped to data.frame |
| as_kinship2_pedigree | Convert pedigree to kinship2 format |
| as.matrix.ped | Convert 'ped' to matrix |
| as.ped | Conversions to ped objects |
| connectedComponents | Connected pedigree components |
| distributeMarkers | Distribute markers evenly along a set of chromosomes |
| famid | Family identifier |
| founderInbreeding | Inbreeding coefficients of founders |
| freqDatabase | Allele frequency database |
| getAlleles | Allele matrix manipulation |
| getComponent | Pedigree component |
| getGenotypes | Genotype matrix |
| getMap | Tabulate marker positions |
| getSex | Get or set the sex of pedigree members |
| harmoniseMarkers | Harmonise markers across components in a ped list |
| inbreedingLoops | Pedigree loops |
| is.marker | Test if something is a marker |
| is.ped | Is an object a 'ped' object? |
| locusAttributes | Get or set locus attributes |
| marker | Marker objects |
| marker_attach | Attach markers to pedigrees |
| marker_getattr | Get marker attributes |
| marker_inplace | Set marker attributes |
| marker_prop | Marker properties |
| marker_select | Select or remove attached markers |
| marker_setattr | Set marker attributes |
| maskPed | Mask and unmask pedigree datasets |
| mendelianCheck | Check for Mendelian errors |
| mergePed | Merge two pedigrees |
| newMarker | Internal marker constructor |
| newPed | Internal ped constructor |
| nMarkers | The number of markers attached to a pedigree |
| ped | Pedigree construction |
| ped_basic | Create basic pedigrees |
| ped_complex | Complex pedigree structures |
| ped_internal | Internal ordering of pedigree members |
| ped_modify | Add/remove pedigree members |
| ped_subgroups | Pedigree subgroups |
| pedtools-package | pedtools: Creating and Working with Pedigrees and Marker Data |
| ped_utils | Pedigree utilities |
| plotmethods | Internal plot methods |
| plot.ped | Plot pedigree |
| plotPedList | Plot a collection of pedigrees. |
| print.nucleus | S3 methods |
| print.ped | Printing pedigrees |
| randomPed | Random pedigree |
| readPed | Read a pedigree from file |
| relabel | Get or modify pedigree labels |
| setMutmod | Set a mutation model |
| setSNPs | Attach SNP loci to a pedigree |
| sortGenotypes | Sort the alleles in each genotype |
| swapGenotypes | Swap genotypes between individuals |
| transferMarkers | Transfer marker data |
| validatePed | Pedigree errors |
| writePed | Write a pedigree to file |
