Man pages for pepr
Reading Portable Encapsulated Projects

activateAmendmentsActivate amendments in objects of '"Project"'
checkSectionCheck for existence of a section in the Project config
configExtract '"Project"'
Config-classConfig objects and specialized list obejcts and expand string...
dot-appendAttrsAppend constant attributes across all the samples
dot-applyAmendmentsApply amendments
dot-applyImportsFunction for recursive config data imports
dot-checkSectionCheck for a section existence in a nested list
dot-deriveAttrsDerive attributes
dot-duplicateAttrsDuplicate a selected attribute across all the samples
dot-expandListRecursively try to expand list of strings
dot-expandPathExpand system path
dot-getSubscriptGet list subscript
dot-implyAttrsImply attributes
dot-inferProjectNameInfer project name
dot-isAbsoluteDetermine whether a path is absolute.
dot-listifyDFListify data frame columns
dot-loadConfigLoad the config of a PEP
dot-loadSampleAnnotationRead sample annotation from disk
dot-loadSubsampleAnnotationLoad single subsample annotation
dot-makeAbsPathCreate an absolute path from a primary target and a parent...
dot-matchesAndRegexesCreate a list of matched files in the system and unmatched...
dot-mergeAttrsMerge samples defined in sample table with ones in subsample...
dot-modifySamplesPerform all the sample addribute modifications
dot-printNestedListPrint a nested list
dot-reformatCheck config spec version and reformat if needed
dot-removeAttrsRemove attributes across all the samples
dot-strformatFormat a string like python's format method
fetchSamplesCollect samples fulfilling the specified requirements
getSampleExtract samples
getSubsampleExtract samples
listAmendmentsList amendments
makeSectionsAbsoluteMake selected sections absolute using config path
ProjectThe constructor of a class representing a Portable...
Project-classPortable Encapsulated Project object
sampleTableView samples in the objects of '"Project"'
select-configAccess '"Config"' object elements
pepr documentation built on Jan. 13, 2021, 3:50 p.m.