Files in pepr
Reading Portable Encapsulated Projects

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
LICENSE
R/config.R R/pepr.R R/constants.R R/project.R R/utils.R inst/doc/gettingStarted.Rmd inst/doc/feature1_constantAttributes.Rmd
inst/doc/feature1_constantAttributes.html
inst/doc/feature2_impliedAttributes.html
inst/doc/feature4_derivedImpliedAttributes.html
inst/doc/feature5_sampleSubtable.Rmd inst/doc/feature4_derivedImpliedAttributes.R
inst/doc/feature6_amendments.html
inst/doc/gettingStarted.html
inst/doc/feature4_derivedImpliedAttributes.Rmd inst/doc/feature6_amendments.Rmd
inst/doc/feature3_derivedAttributes.html
inst/doc/feature2_impliedAttributes.R inst/doc/feature5_sampleSubtable.R inst/doc/gettingStarted.R
inst/doc/feature5_sampleSubtable.html
inst/doc/feature1_constantAttributes.R inst/doc/feature6_amendments.R inst/doc/feature3_derivedAttributes.R inst/doc/feature3_derivedAttributes.Rmd inst/doc/feature2_impliedAttributes.Rmd inst/extdata/example_peps-master/README.md
inst/extdata/example_peps-master/example_noname/project_config_noname.yaml
inst/extdata/example_peps-master/example_noname/project_config.yaml
inst/extdata/example_peps-master/example_noname/sample_table.csv
inst/extdata/example_peps-master/example_piface/readData.R
inst/extdata/example_peps-master/example_piface/pipeline_interface2_project.yaml
inst/extdata/example_peps-master/example_piface/resources-sample.tsv
inst/extdata/example_peps-master/example_piface/annotation_sheet.csv
inst/extdata/example_peps-master/example_piface/pipeline_interface1_sample.yaml
inst/extdata/example_peps-master/example_piface/pipeline_interface2_sample.yaml
inst/extdata/example_peps-master/example_piface/project_config.yaml
inst/extdata/example_peps-master/example_piface/pipeline_interface1_project.yaml
inst/extdata/example_peps-master/example_piface/resources-project.tsv
inst/extdata/example_peps-master/example_piface/output_schema.yaml
inst/extdata/example_peps-master/example_subtable2/subsample_table.csv
inst/extdata/example_peps-master/example_subtable2/project_config.yaml
inst/extdata/example_peps-master/example_subtable2/sample_table.csv
inst/extdata/example_peps-master/example_subtable5/subsample_table.csv
inst/extdata/example_peps-master/example_subtable5/project_config.yaml
inst/extdata/example_peps-master/example_subtable5/sample_table.csv
inst/extdata/example_peps-master/example_derive/sample_table_pre.csv
inst/extdata/example_peps-master/example_derive/project_config.yaml
inst/extdata/example_peps-master/example_derive/sample_table.csv
inst/extdata/example_peps-master/example_imply/sample_table_pre.csv
inst/extdata/example_peps-master/example_imply/project_config.yaml
inst/extdata/example_peps-master/example_imply/sample_table.csv
inst/extdata/example_peps-master/example_remove/project_config.yaml
inst/extdata/example_peps-master/example_remove/sample_table.csv
inst/extdata/example_peps-master/example_imports/project_config1.yaml
inst/extdata/example_peps-master/example_imports/project_config.yaml
inst/extdata/example_peps-master/example_imports/sample_table.csv
inst/extdata/example_peps-master/example_basic/project_config.yaml
inst/extdata/example_peps-master/example_basic/sample_table.csv
inst/extdata/example_peps-master/example_append/sample_table_pre.csv
inst/extdata/example_peps-master/example_append/project_config.yaml
inst/extdata/example_peps-master/example_append/sample_table.csv
inst/extdata/example_peps-master/example_derive_imply/sample_table_pre.csv
inst/extdata/example_peps-master/example_derive_imply/project_config.yaml
inst/extdata/example_peps-master/example_derive_imply/sample_table.csv
inst/extdata/example_peps-master/example_duplicate/project_config.yaml
inst/extdata/example_peps-master/example_duplicate/sample_table.csv
inst/extdata/example_peps-master/example_amendments2/sample_table_pre.csv
inst/extdata/example_peps-master/example_amendments2/project_config.yaml
inst/extdata/example_peps-master/example_amendments2/sample_table.csv
inst/extdata/example_peps-master/example_amendments2/sample_table_noFrog.csv
inst/extdata/example_peps-master/example_BiocProject_remote/readRemoteData_resize.R
inst/extdata/example_peps-master/example_BiocProject_remote/project_config_resize.yaml
inst/extdata/example_peps-master/example_BiocProject_remote/project_config.yaml
inst/extdata/example_peps-master/example_BiocProject_remote/readRemoteData.R
inst/extdata/example_peps-master/example_BiocProject_remote/sample_table.csv
inst/extdata/example_peps-master/example_BiocProject/readBedFiles.R
inst/extdata/example_peps-master/example_BiocProject/project_config_resize.yaml
inst/extdata/example_peps-master/example_BiocProject/project_config.yaml
inst/extdata/example_peps-master/example_BiocProject/sample_table.csv
inst/extdata/example_peps-master/example_BiocProject/readBedFiles_resize.R
inst/extdata/example_peps-master/example_BiocProject/data/laminB1Lads.bed
inst/extdata/example_peps-master/example_BiocProject/data/vistaEnhancers.bed
inst/extdata/example_peps-master/example_BiocProject_exceptions/project_config.yaml
inst/extdata/example_peps-master/example_BiocProject_exceptions/sample_table.csv
inst/extdata/example_peps-master/example_BiocProject_exceptions/readBedFilesExceptions.R
inst/extdata/example_peps-master/example_amendments1/sample_table_newLib2.csv
inst/extdata/example_peps-master/example_amendments1/sample_table_pre.csv
inst/extdata/example_peps-master/example_amendments1/project_config.yaml
inst/extdata/example_peps-master/example_amendments1/sample_table_newLib.csv
inst/extdata/example_peps-master/example_amendments1/sample_table.csv
inst/extdata/example_peps-master/example_subtable3/subsample_table.csv
inst/extdata/example_peps-master/example_subtable3/project_config.yaml
inst/extdata/example_peps-master/example_subtable3/sample_table.csv
inst/extdata/example_peps-master/example_subtable4/subsample_table.csv
inst/extdata/example_peps-master/example_subtable4/project_config.yaml
inst/extdata/example_peps-master/example_subtable4/sample_table.csv
inst/extdata/example_peps-master/example_subtables/subsample_table.csv
inst/extdata/example_peps-master/example_subtables/project_config.yaml
inst/extdata/example_peps-master/example_subtables/subsample_table1.csv
inst/extdata/example_peps-master/example_subtables/sample_table.csv
inst/extdata/example_peps-master/example_subtable1/subsample_table.csv
inst/extdata/example_peps-master/example_subtable1/project_config.yaml
inst/extdata/example_peps-master/example_subtable1/sample_table.csv
build/vignette.rds
tests/testthat.R tests/testthat/test_project_operations.R tests/testthat/test_config.R tests/testthat/test_utils.R tests/testthat/test_project.R vignettes/gettingStarted.Rmd vignettes/feature1_constantAttributes.Rmd vignettes/feature5_sampleSubtable.Rmd vignettes/feature4_derivedImpliedAttributes.Rmd vignettes/feature6_amendments.Rmd vignettes/feature3_derivedAttributes.Rmd vignettes/feature2_impliedAttributes.Rmd man/dot-applyAmendments.Rd man/activateAmendments.Rd man/dot-listifyDF.Rd man/getSubsample.Rd man/sampleTable.Rd man/dot-inferProjectName.Rd man/Project.Rd man/dot-isAbsolute.Rd man/dot-getSubscript.Rd man/dot-mergeAttrs.Rd man/makeSectionsAbsolute.Rd man/dot-loadSubsampleAnnotation.Rd man/dot-loadConfig.Rd man/dot-implyAttrs.Rd man/dot-strformat.Rd man/dot-reformat.Rd man/checkSection.Rd man/dot-appendAttrs.Rd man/dot-matchesAndRegexes.Rd man/dot-applyImports.Rd man/dot-expandList.Rd man/Project-class.Rd man/dot-loadSampleAnnotation.Rd man/dot-duplicateAttrs.Rd man/pepr.Rd man/select-config.Rd man/dot-checkSection.Rd man/dot-makeAbsPath.Rd man/config.Rd man/dot-printNestedList.Rd man/dot-deriveAttrs.Rd man/dot-expandPath.Rd man/Config-class.Rd man/getSample.Rd man/dot-modifySamples.Rd man/listAmendments.Rd man/dot-removeAttrs.Rd man/fetchSamples.Rd
pepr documentation built on Jan. 13, 2021, 3:50 p.m.