getSubsample: Extract samples

Description Usage Arguments Value Methods (by class) Examples

Description

This method extracts the samples

Usage

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getSubsample(.Object, sampleName, subsampleName)

## S4 method for signature 'Project,character,character'
getSubsample(.Object, sampleName, subsampleName)

Arguments

.Object

An object of Project class

sampleName

character the name of the sample

subsampleName

character the name of the subsample

Value

data.table one row data table with the subsample associated metadata

Methods (by class)

Examples

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projectConfig = system.file(
"extdata",
"example_peps-master",
"example_subtable1",
"project_config.yaml",
package = "pepr"
)
p = Project(projectConfig)
sampleName = "frog_1"
subsampleName = "sub_a"
getSubsample(p, sampleName, subsampleName)

pepr documentation built on Jan. 13, 2021, 3:50 p.m.