getSubsample: Extract subsamples

In pepr: Reading Portable Encapsulated Projects

Extract subsamples

Description

This method extracts the subsamples

Usage

getSubsample(.Object, sampleName, subsampleName)

## S4 method for signature 'Project,character,character'
getSubsample(.Object, sampleName, subsampleName)

Arguments

.Object	An object of Project class
sampleName	character the name of the sample
subsampleName	character the name of the subsample

Value

data.table one row data table with the subsample associated metadata

Methods (by class)

• getSubsample( .Object = Project, sampleName = character, subsampleName = character ): extracts the subsamples from the "Project" object

Examples

projectConfig = system.file(
"extdata",
"example_peps-master",
"example_subtable1",
"project_config.yaml",
package = "pepr"
)
p = Project(projectConfig)
sampleName = "frog_1"
subsampleName = "sub_a"
getSubsample(p, sampleName, subsampleName)

pepr documentation built on Nov. 21, 2023, 5:06 p.m.