summary: Summarize a PHATE object

In phateR: PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding

Description

Summarize a PHATE object

Usage

## S3 method for class 'phate'
summary(object, ...)

Arguments

object	A fitted PHATE object
...	Arguments for summary()

Examples

if (reticulate::py_module_available("phate")) {

# data(tree.data)
# We use a smaller tree to make examples run faster
data(tree.data.small)
phate.tree <- phate(tree.data.small$data)
summary(phate.tree)
## PHATE embedding
## knn = 5, decay = 40, t = 58
## Data: (3000, 100)
## Embedding: (3000, 2)

}

phateR documentation built on Feb. 12, 2021, 5:12 p.m.