phyclust: Phylogenetic Clustering (Phyloclustering)
Version 0.1-22

Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002) , seq-gen (Rambaut and Grassly 1997) , Hap-Clustering (Tzeng 2005) and PAML baseml (Yang 1997, 2007) , , for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.

Package details

AuthorWei-Chen Chen [aut, cre], Karin Dorman [aut]
Date of publication2017-12-02 19:22:25 UTC
MaintainerWei-Chen Chen <[email protected]>
LicenseGPL (>= 2)
Version0.1-22
URL http://snoweye.github.io/phyclust/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("phyclust")

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phyclust documentation built on Dec. 3, 2017, 1:05 a.m.