View source: R/p_tool_star_tree.r
get.rooted.tree.height | R Documentation |
This function gets a rooted tree height, and only meaningful for a ultrametric tree which has the equal height from the root to all leaves.
get.rooted.tree.height(rooted.tree,
tol = .Machine$double.eps^0.5)
rooted.tree |
a rooted tree in |
tol |
for |
The rooted.tree
should be in a phylo
class of ape,
and should be ultrametric that may be created by ms
.
Return the rooted tree height.
Wei-Chen Chen wccsnow@gmail.com
Phylogenetic Clustering Website: https://snoweye.github.io/phyclust/
ms
,
read.tree
,
as.phylo
,
is.ultrametric
,
rescale.rooted.tree
.
## Not run:
library(phyclust, quiet = TRUE)
set.seed(1234)
ret.ms <- ms(5, 1, opts = paste("-T", sep = " "))
tree.ms <- read.tree(text = ret.ms[3])
is.ultrametric(tree.ms)
get.rooted.tree.height(tree.ms)
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.