phyloclim: Integrating Phylogenetics and Climatic Niche Modeling
Version 0.9-4

This package implements some recently developed methods in phyloclimatic modeling.

Browse man pages Browse package API and functions Browse package files

AuthorChristoph Heibl, Clement Calenge (\code{import.ascii})
Date of publication2013-07-13 16:34:20
MaintainerChristoph Heibl <christoph.heibl@gmx.net>
LicenseGPL (>= 2)
Version0.9-4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("phyloclim")

Man pages

age.range.correlation: Age-Range Correlation
anc.clim: Estimation of Ancestral Climatic Tolerances
equ: Niche overlap for Oxalis enneaphylla and O. lacinita
hypothesis.tests: Niche Equivalency and Background Similarity Test
niche.overlap: Quantification of Niche Overlap
palmatifoliae: _Oxalis_ section _Palmatifoliae_
phyloclim-internal: Internal PhyloClim Functions
phyloclim-package: Phyloclimatic data analysis
plotAncClim: Chronograms with Climatic Data on the Y-Axis
plotPNO: Plot Predicted Niche Occupancy Profiles
pno: Predicted Niche Occupancy Profiles
pno.weighted.mean: Weighted means of niche dimensions

Functions

AC.node.trans Man page Source code
PNO Man page
age.range.correlation Man page Source code
anc.clim Man page Source code
bg.similarity.test Man page Source code
descendants Man page Source code
di.enm Man page Source code
di.pno Man page Source code
equ Man page
identity.test Man page
import.asc Man page Source code
nbConnectingNodes Man page Source code
nested.mean.overlap Man page Source code
niche.equivalency.test Man page Source code
niche.identity.test Man page
niche.overlap Man page Source code
noi Man page Source code
palmatifoliae Man page
phyloclim Man page
phyloclim-package Man page
plot.ntest Man page Source code
plotAncClim Man page Source code
plotPNO Man page Source code
pno Man page Source code
pno.weighted.mean Man page Source code
print.ntest Man page Source code
sim Man page
sister Man page Source code
sites Man page
terminal.sisters Man page Source code
thinPNO Man page Source code
tree Man page

Files

MD5
man
man/pno.weighted.mean.Rd
man/pno.Rd
man/plotPNO.Rd
man/plotAncClim.Rd
man/phyloclim-package.Rd
man/phyloclim-internal.Rd
man/palmatifoliae.Rd
man/niche.overlap.Rd
man/hypothesis.tests.Rd
man/equ.Rd
man/anc.clim.Rd
man/age.range.correlation.Rd
inst
inst/extdata
inst/extdata/bio12.asc
inst/extdata/bio1.asc
inst/extdata/alt.asc
debug
debug/rewrite_niche.overlap.R
debug/rewrite_niche.equivalency.test.R
debug/debug_sum.clades.R
debug/debug_read.beast.R
debug/debug_rbeauti.R
debug/debug_plot.chronoclim.R
debug/debug_phylo3D.R
debug/debug_nested.mean.overlap.R
debug/debug_bin.raw.probs.R
debug/debug_bg.similarity.test.R
debug/debug_anclim.R
debug/debug_age.range.corr.R
debug/debug.niche.overlap.R
debug/datasetNET+BST.sh
data
data/tree.rda
data/sites.rda
data/sim.rda
data/equ.rda
data/PNO.rda
R
R/thinPNO.R
R/terminal.sisters.R
R/sister.R
R/print.ntest.R
R/pno.weighted.mean.R
R/pno.R
R/plotPNO.R
R/plotAncClim.R
R/plot.ntest.R
R/noi.R
R/niche.overlap.R
R/niche.equivalency.test.R
R/nested.mean.overlap.R
R/nbConnectingNodes.R
R/import.asc.r
R/di.pno.R
R/di.enm.R
R/descendants.R
R/bg.similarity.test.R
R/anc.clim.R
R/age.range.correlation.R
R/AC.node.trans.R
NAMESPACE
DESCRIPTION
ChangeLog
phyloclim documentation built on May 19, 2017, 7:52 p.m.