phyloclim: Integrating Phylogenetics and Climatic Niche Modeling

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This package implements some recently developed methods in phyloclimatic modeling.

Author
Christoph Heibl, Clement Calenge (\code{import.ascii})
Date of publication
2013-07-13 16:34:20
Maintainer
Christoph Heibl <christoph.heibl@gmx.net>
License
GPL (>= 2)
Version
0.9-4

View on CRAN

Man pages

age.range.correlation
Age-Range Correlation
anc.clim
Estimation of Ancestral Climatic Tolerances
equ
Niche overlap for Oxalis enneaphylla and O. lacinita
hypothesis.tests
Niche Equivalency and Background Similarity Test
niche.overlap
Quantification of Niche Overlap
palmatifoliae
_Oxalis_ section _Palmatifoliae_
phyloclim-internal
Internal PhyloClim Functions
phyloclim-package
Phyloclimatic data analysis
plotAncClim
Chronograms with Climatic Data on the Y-Axis
plotPNO
Plot Predicted Niche Occupancy Profiles
pno
Predicted Niche Occupancy Profiles
pno.weighted.mean
Weighted means of niche dimensions

Files in this package

phyloclim
phyloclim/MD5
phyloclim/man
phyloclim/man/pno.weighted.mean.Rd
phyloclim/man/pno.Rd
phyloclim/man/plotPNO.Rd
phyloclim/man/plotAncClim.Rd
phyloclim/man/phyloclim-package.Rd
phyloclim/man/phyloclim-internal.Rd
phyloclim/man/palmatifoliae.Rd
phyloclim/man/niche.overlap.Rd
phyloclim/man/hypothesis.tests.Rd
phyloclim/man/equ.Rd
phyloclim/man/anc.clim.Rd
phyloclim/man/age.range.correlation.Rd
phyloclim/inst
phyloclim/inst/extdata
phyloclim/inst/extdata/bio12.asc
phyloclim/inst/extdata/bio1.asc
phyloclim/inst/extdata/alt.asc
phyloclim/debug
phyloclim/debug/rewrite_niche.overlap.R
phyloclim/debug/rewrite_niche.equivalency.test.R
phyloclim/debug/debug_sum.clades.R
phyloclim/debug/debug_read.beast.R
phyloclim/debug/debug_rbeauti.R
phyloclim/debug/debug_plot.chronoclim.R
phyloclim/debug/debug_phylo3D.R
phyloclim/debug/debug_nested.mean.overlap.R
phyloclim/debug/debug_bin.raw.probs.R
phyloclim/debug/debug_bg.similarity.test.R
phyloclim/debug/debug_anclim.R
phyloclim/debug/debug_age.range.corr.R
phyloclim/debug/debug.niche.overlap.R
phyloclim/debug/datasetNET+BST.sh
phyloclim/data
phyloclim/data/tree.rda
phyloclim/data/sites.rda
phyloclim/data/sim.rda
phyloclim/data/equ.rda
phyloclim/data/PNO.rda
phyloclim/R
phyloclim/R/thinPNO.R
phyloclim/R/terminal.sisters.R
phyloclim/R/sister.R
phyloclim/R/print.ntest.R
phyloclim/R/pno.weighted.mean.R
phyloclim/R/pno.R
phyloclim/R/plotPNO.R
phyloclim/R/plotAncClim.R
phyloclim/R/plot.ntest.R
phyloclim/R/noi.R
phyloclim/R/niche.overlap.R
phyloclim/R/niche.equivalency.test.R
phyloclim/R/nested.mean.overlap.R
phyloclim/R/nbConnectingNodes.R
phyloclim/R/import.asc.r
phyloclim/R/di.pno.R
phyloclim/R/di.enm.R
phyloclim/R/descendants.R
phyloclim/R/bg.similarity.test.R
phyloclim/R/anc.clim.R
phyloclim/R/age.range.correlation.R
phyloclim/R/AC.node.trans.R
phyloclim/NAMESPACE
phyloclim/DESCRIPTION
phyloclim/ChangeLog