phyloland: Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework

Phyloland package models a space colonization process mapped onto a phylogeny, it aims at estimating limited dispersal and ecological competitive exclusion in a Bayesian MCMC statistical phylogeographic framework (please refer to phyloland-package help for details.)

Author
Louis Ranjard, Marie Paturel
Date of publication
2014-09-13 07:55:48
Maintainer
Louis Ranjard <l.ranjard@auckland.ac.nz>
License
GPL-2
Version
1.3

View on CRAN

Man pages

Banza
Banza MCMC output
phyloland-internal
Internal phyloland Functions
phyloland-package
Modelling competition and dispersal in a statistical...
PLD_interface
Model parameters and internal locations estimations
PLD_loc_mrca
Location of Most Recent Common Ancestor
PLD_plot_stat_mig
Plot dispersal statistics
PLD_plot_trees
Plot sampled trees
PLD_stat_mig
Dispersal statistics
tree_Banza.nex
Phylogenetic tree of Banza

Files in this package

phyloland
phyloland/inst
phyloland/inst/extdata
phyloland/inst/extdata/locations_Banza.txt
phyloland/inst/extdata/tree_Banza.nex.txt
phyloland/src
phyloland/src/main.c
phyloland/NAMESPACE
phyloland/data
phyloland/data/Banza.RData
phyloland/R
phyloland/R/pack_Phylogeo_Functions_g.R
phyloland/R/zzz.R
phyloland/MD5
phyloland/DESCRIPTION
phyloland/man
phyloland/man/phyloland-internal.Rd
phyloland/man/PLD_stat_mig.Rd
phyloland/man/PLD_loc_mrca.Rd
phyloland/man/phyloland-package.Rd
phyloland/man/Banza.Rd
phyloland/man/PLD_plot_stat_mig.Rd
phyloland/man/PLD_plot_trees.Rd
phyloland/man/PLD_interface.Rd
phyloland/man/tree_Banza.nex.Rd