phyloland: Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework

Phyloland package models a space colonization process mapped onto a phylogeny, it aims at estimating limited dispersal and ecological competitive exclusion in a Bayesian MCMC statistical phylogeographic framework (please refer to phyloland-package help for details.)

AuthorLouis Ranjard, Marie Paturel
Date of publication2014-09-13 07:55:48
MaintainerLouis Ranjard <l.ranjard@auckland.ac.nz>
LicenseGPL-2
Version1.3

View on CRAN

Functions

ancestor Man page
ancestors Man page
Banza Man page
break_node_height_tie Man page
check_treel Man page
children Man page
childrentip Man page
converttree Man page
effSaSize Man page
ftips Man page
height Man page
internal_loc Man page
internal_node_height Man page
lconverttree Man page
loc_ancestor Man page
mcmc_phyloland Man page
new_migration Man page
phyloland Man page
phyloland-package Man page
PLD_interface Man page
PLD_loc_mrca Man page
PLD_plot_stat_mig Man page
PLD_plot_trees Man page
PLD_stat_mig Man page
plot_trees_tips Man page
read_loc Man page
read_space Man page
reorder_treel Man page
reorder_treep Man page
replace_tips Man page
sigma_upperlim Man page
sim_history Man page
sim_mig Man page
space_dist Man page
stat_phyloland Man page
test_tree Man page
tree_Banza Man page
treel2mig Man page
treel2par Man page
treeLikeli Man page
verif_arg Man page

Files

phyloland
phyloland/inst
phyloland/inst/extdata
phyloland/inst/extdata/locations_Banza.txt
phyloland/inst/extdata/tree_Banza.nex.txt
phyloland/src
phyloland/src/main.c
phyloland/NAMESPACE
phyloland/data
phyloland/data/Banza.RData
phyloland/R
phyloland/R/pack_Phylogeo_Functions_g.R phyloland/R/zzz.R
phyloland/MD5
phyloland/DESCRIPTION
phyloland/man
phyloland/man/phyloland-internal.Rd phyloland/man/PLD_stat_mig.Rd phyloland/man/PLD_loc_mrca.Rd phyloland/man/phyloland-package.Rd phyloland/man/Banza.Rd phyloland/man/PLD_plot_stat_mig.Rd phyloland/man/PLD_plot_trees.Rd phyloland/man/PLD_interface.Rd phyloland/man/tree_Banza.nex.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.