Banza: Banza MCMC output

In phyloland: Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework

Description

This data set was generated by the function PLD_interface.Rd using a phylogeny constructed from the data of Shapiro et al. (2006). The command was: names_locations = c("Maui_Nui","Maui_Nui","Maui_Nui","Maui_Nui","Kauai","Kauai","Maui_Nui","Maui_Nui","Maui_Nui","Maui_Nui","Nihoa","Nihoa","Hawaii","Hawaii","Hawaii","Oahu","Oahu","Maui_Nui","Maui_Nui","Oahu","Oahu"); Banza = PLD_interface(fileTREES=system.file("extdata","tree_Banza.nex.txt",package="phyloland"),fileDATA=system.file("extdata","locations_Banza.txt",package="phyloland"), num_step=10000,freq=10,ess_lim=500,id_filena="Banza",names_locations=names_locations)

Usage

banza

Format

An object of class “phyloland" comprising 7 attributes:

1. trees 1000 multiPhylo list

2. locations 41 data.frame list

3. tips 21 -none- character

4. space 10 -none- numeric

5. index 1 -none- list

6. mcmc 8 -none- list

7. sigma_limit 2 -none- numeric

Source

Output generated by phyloland:PLD_interface.Rd

References

Shapiro LH, Strazanac JS, Roderick GK. Molecular phylogeny of Banza (Orthoptera: Tettigoniidae), the endemic katydids of the Hawaiian Archipelago. Mol. Phylogenet. Evol. 41(1):53-63, 2006.

phyloland documentation built on May 2, 2019, 6:46 a.m.