plot.phylocorrelogram: Plot a phylogenetic correlogram

In phylosignal: Exploring the Phylogenetic Signal in Continuous Traits

Plot a phylogenetic correlogram

Description

This function plots phylogenetic correlograms produced by phyloCorrelogram

Usage

## S3 method for class 'phylocorrelogram'
plot(
  x,
  show.ci = TRUE,
  show.h0 = TRUE,
  show.test = TRUE,
  xlab = "Phylogenetic distance",
  ylab = "Correlation",
  main = "Phylogenetic correlogram",
  ...
)

Arguments

x	a phylocorrelogram object.
show.ci	a logical indicating whether to plot the confidence interval envelop (default TRUE).
show.h0	a logical indicating whether to plot the the line showing the expected value of Moran's I under the null hypothesis of no phylogenetic autocorrelation (default TRUE).
show.test	a logical indicating whether to plot indicator of significance (default TRUE).
xlab	a label for the x axis.
ylab	a label for the y axis.
main	a main title for the plot
...	other graphical parameters passed to the plot function.

Examples

## Not run: 
data(navic)
pc <- phyloCorrelogram(navic)
plot(pc)

## End(Not run)

phylosignal documentation built on Oct. 12, 2023, 5:13 p.m.