plot.phylosimsignal: Plot signal estimation as a fraction of a Brownian Motion...

In phylosignal: Exploring the Phylogenetic Signal in Continuous Traits

Plot signal estimation as a fraction of a Brownian Motion process.

Description

Plot signal estimation as a fraction of a Brownian Motion process.

Usage

## S3 method for class 'phylosimsignal'
plot(
  x,
  methods = NULL,
  traits = NULL,
  stacked.methods = FALSE,
  stacked.traits = FALSE,
  print.quantiles = TRUE,
  col = 1:5,
  legend = TRUE,
  ...
)

Arguments

x	an object of class phylosimsignal.
methods	a character vector giving the methods (included in the phylosimsignal object) to plot.
traits	a character vector giving the traits (included in the phylosimsignal object) to plot.
stacked.methods	If different methods have been used, should they be plotted on the same graphic (TRUE) or not (FALSE, default).
stacked.traits	If different traits have been used, should they be plotted on the same graphic (TRUE) or not (FALSE, default).
print.quantiles	logical stating whether quantiles should be plotted.
col	a vector of colors for the different methods.
legend	a logical. If stacked.methods is set to TRUE, should a legend be printed to differentiate the different methods?
...	further arguments to be passed to or from other methods.

phylosignal documentation built on Oct. 12, 2023, 5:13 p.m.