ps_add_dissim: Add community dissimilarity data to a 'phylospatial' object

In phylospatial: Spatial Phylogenetic Analysis

Add community dissimilarity data to a phylospatial object

Description

This function calculates pairwise phylogenetic dissimilarity between communities and returns the phylospatial object with the dissimilarity data added as an element called dissim. See ps_dissim for details.

Usage

ps_add_dissim(ps, method = "sorensen", ...)

Arguments

ps	phylospatial data set.
method	Dissimilarity metric; see ps_dissim for details.
...	Additional arguments passed to ps_dissim, such as fun, endemism, or normalize.

Value

ps with a new dissim element added.

Examples

ps <- ps_simulate(data_type = "prob")
ps_add_dissim(ps)
ps_add_dissim(ps, fun = "vegdist", method = "jaccard", endemism = TRUE)

phylospatial documentation built on April 12, 2025, 1:35 a.m.