bioc_version | R Documentation |
Various helper functions to deal with Bioconductor repositories. See https://www.bioconductor.org/ for more information on Bioconductor.
bioc_version(r_version = getRversion(), forget = FALSE)
bioc_version_map(forget = FALSE)
bioc_devel_version(forget = FALSE)
bioc_release_version(forget = FALSE)
bioc_repos(bioc_version = "auto", forget = FALSE)
r_version |
The R version number to match. |
forget |
Use |
bioc_version |
Bioconductor version string or |
bioc_version()
queries the matching Bioconductor version for
an R version, defaulting to the current R version
bioc_version_map()
returns the current mapping between R versions
and Bioconductor versions.
bioc_devel_version()
returns the version number of the current
Bioconductor devel version.
bioc_release_version()
returns the version number of the current
Bioconductor release.
bioc_repos()
returns the Bioconductor repository URLs.
See the BioC_mirror
option and the R_BIOC_MIRROR
and
R_BIOC_VERSION
environment variables in the pkgcache manual page.
They can be used to customize the desired Bioconductor version.
bioc_version()
returns a package_version object.
bioc_version_map()
returns a data frame with columns:
bioc_version
: package_version object, Bioconductor versions.
r_version
: package_version object, the matching R versions.
bioc_status
: factor, with levels: out-of-date
, release
,
devel
, future
.
bioc_devel_version()
returns a package_version object.
bioc_release_version()
returns a package_version object.
bioc_repos()
returns a named character vector.
bioc_version()
bioc_version("4.0")
bioc_version("4.1")
bioc_version_map()
bioc_devel_version()
bioc_release_version()
bioc_repos()
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