plantecophys: Modelling and Analysis of Leaf Gas Exchange Data
Version 1.1-8

Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions.

Browse man pages Browse package API and functions Browse package files

AuthorRemko Duursma [aut, cre]
Date of publication2016-08-23 06:59:46
MaintainerRemko Duursma <remkoduursma@gmail.com>
LicenseGPL
Version1.1-8
URL https://www.bitbucket.org/remkoduursma/plantecophys
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("plantecophys")

Man pages

AciC4: C4 Photosynthesis
acidata1: An example A-Ci curve
Conversions: Conversions between relative humidity, vapour pressure...
FARAO: FARquhar And Opti
fitaci: Fit the Farquhar-Berry-von Caemmerer model of leaf...
fitacis: Fit multiple A-Ci curves at once
fitBB: Fit Ball-Berry type models of stomatal conductance
manyacidat: An example dataset with multiple A-Ci curves
Photosyn: Coupled leaf gas exchange model
PhotosynEB: Coupled leaf gas exchange model with energy balance
plantecophys-package: Modelling and Analysis of Leaf Gas Exchange Data

Functions

Aci Man page Source code
AciC4 Man page Source code
DewtoVPD Man page Source code
FARAO Man page Source code
FARAO2 Man page Source code
FindTleaf Man page Source code
Jfun Source code
LeafEnergyBalance Source code
OPTfun Source code
OPTfunEB Source code
Photosyn Man page Source code
PhotosynEB Man page Source code
QUADP Source code
RHairToLeaf Man page Source code
RHleafToAir Man page Source code
RHtoVPD Man page Source code
Rgas Source code
Stop Source code
TGammaStar Source code
TJmax Source code
TKm Source code
TVcmax Source code
Tk Source code
VPDairToLeaf Man page Source code
VPDleafToAir Man page Source code
VPDtoRH Man page Source code
Warning Source code
acidata1 Man page
acifun_wrap Source code
arrh Source code
coef.BBfit Source code
coef.acifit Source code
coef.acifits Source code
do_acirun Source code
do_fit_bygroup Source code
do_fit_method1 Source code
do_fit_method2 Source code
do_fit_method_bilinear Source code
do_fit_method_bilinear_bestcitrans Source code
esat Man page Source code
findCiTransition Source code
fitBB Man page Source code
fitaci Man page Source code
fitacis Man page Source code
fitted.acifit Source code
getdAdE Source code
guess_Jmax Source code
guess_Rd Source code
guess_Vcmax Source code
inverseJfun Source code
manyacidat Man page
plantecophys Man page
plantecophys-package Man page
plot.acifit Man page Source code
plot.acifits Man page Source code
print.BBfit Source code
print.acifit Source code
rmse_acifit Source code
set_PPFD Source code
set_Rdmeas Source code
set_Tleaf Source code
summary.acifit Source code

Files

inst
inst/CITATION
tests
tests/testthat.R
tests/testthat
tests/testthat/ACi_court2.csv
tests/testthat/testfitaci.R
NAMESPACE
data
data/manyacidat.rda
data/acidata1.rda
R
R/FARAO.R
R/utils.R
R/fitaci_methods.R
R/fitacis.R
R/plantecophys-package.R
R/LeafEnergyBalance.R
R/findCiTransition.R
R/AciC4.R
R/RHtoVPD.R
R/photosyn.R
R/fitBB.R
R/fitaci.R
R/Tresponsefunctions.R
R/QUADP.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/Photosyn.Rd
man/fitBB.Rd
man/manyacidat.Rd
man/fitacis.Rd
man/plantecophys-package.Rd
man/FARAO.Rd
man/acidata1.Rd
man/fitaci.Rd
man/AciC4.Rd
man/Conversions.Rd
man/PhotosynEB.Rd
plantecophys documentation built on May 19, 2017, 10:47 p.m.