efourier_shape: Draw shapes based on Fourier coefficients

In pliman: Tools for Plant Image Analysis

Draw shapes based on Fourier coefficients

Description

Calculates a 'Fourier elliptical shape' given Fourier coefficients

Usage

efourier_shape(
  an = NULL,
  bn = NULL,
  cn = NULL,
  dn = NULL,
  n = 1,
  nharm = NULL,
  npoints = 150,
  alpha = 4,
  plot = TRUE
)

Arguments

an	The a_n Fourier coefficients on which to calculate a shape.
bn	The b_n Fourier coefficients on which to calculate a shape.
cn	The c_n Fourier coefficients on which to calculate a shape.
dn	The d_n Fourier coefficients on which to calculate a shape.
n	The number of shapes to generate. Defaults to 1. If more than one shape is used, a list of coordinates is returned.
nharm	The number of harmonics to use. It must be less than or equal to the length of ⁠*_n⁠ coefficients.
npoints	The number of points to calculate.
alpha	The power coefficient associated with the (usually decreasing) amplitude of the Fourier coefficients.
plot	Logical indicating Whether to plot the shape. Defaults to ´TRUE'

Details

efourier_shape can be used by specifying nharm and alpha. The coefficients are then sampled in an uniform distribution (-\pi ; \pi) and this amplitude is then divided by harmonicrank ^ alpha. If alpha is lower than 1, consecutive coefficients will thus increase. See Claude (2008) pp.223 for the maths behind inverse ellipitical Fourier

Adapted from Claude (2008). pp. 223.

Value

A list with components:

• x vector of x-coordrdinates

• y vector of y-coordrdinates.

References

Claude, J. (2008) Morphometrics with R, Use R! series, Springer 316 pp.

Examples

library(pliman)
# approximation of the third leaf's perimeter
# 4 harmonics
image_pliman("potato_leaves.jpg", plot = TRUE)

efourier_shape(an = c(-7.34,  1.81,  -1.32, 0.50),
               bn = c(-113.88, 21.90, -0.31, -6.14),
               cn = c(-147.51, -20.89, 0.66, -14.06),
               dn = c(-0.48, 2.36, -4.36, 3.03))

pliman documentation built on Oct. 15, 2023, 1:06 a.m.