3D arrows, segments, polygons, boxes, rectangles  R Documentation 
Functions arrows3D
and segments3D
draw arrows and line segments
between pairs of points.
Functions box3D
and border3D
draw boxes between pairs of points.
polygon3D
draws polygons; rect3D
draws rectangles.
The 2D functions arrows2D
, segments2D
, rect2D
and polygon2D
are included
for their side effect of having a color key.
arrows3D (x0, y0, z0, x1 = x0, y1 = y0, z1 = z0, ...,
colvar = NULL, phi = 40, theta = 40,
col = NULL, NAcol = "white", breaks = NULL,
colkey = NULL, panel.first = NULL,
clim = NULL, clab = NULL, bty = "b", type = "triangle",
add = FALSE, plot = TRUE)
segments3D (x0, y0, z0, x1 = x0, y1 = y0, z1 = z0, ...,
colvar = NULL, phi = 40, theta = 40,
col = NULL, NAcol = "white", breaks = NULL,
colkey = NULL, panel.first = NULL,
clim = NULL, clab = NULL, bty = "b",
add = FALSE, plot = TRUE)
box3D (x0, y0, z0, x1, y1, z1, ...,
colvar = NULL, phi = 40, theta = 40,
col = NULL, NAcol = "white", breaks = NULL,
border = NA, facets = TRUE, colkey = NULL,
panel.first = NULL, clim = NULL, clab = NULL, bty = "b",
add = FALSE, plot = TRUE)
border3D(x0, y0, z0, x1, y1, z1, ...,
colvar = NULL, phi = 40, theta = 40,
col = NULL, NAcol = "white", breaks = NULL,
colkey = NULL, panel.first = NULL,
clim = NULL, clab = NULL, bty = "b",
add = FALSE, plot = TRUE)
rect3D (x0, y0, z0, x1 = NULL, y1 = NULL, z1 = NULL, ...,
colvar = NULL, phi = 40, theta = 40,
col = NULL, NAcol = "white", breaks = NULL,
border = NA, facets = TRUE, colkey = NULL,
panel.first = NULL, clim = NULL, clab = NULL, bty = "b",
add = FALSE, plot = TRUE)
polygon3D (x, y, z, ...,
colvar = NULL, phi = 40, theta = 40,
col = NULL, NAcol = "white", breaks = NULL,
border = NA, facets = TRUE, colkey = NULL,
panel.first = NULL, clim = NULL, clab = NULL, bty = "b",
add = FALSE, plot = TRUE)
arrows2D (x0, y0, x1 = x0, y1 = y0, ..., colvar = NULL,
col = NULL, NAcol = "white", breaks = NULL,
colkey = NULL, clim = NULL, clab = NULL,
type = "triangle", add = FALSE, plot = TRUE)
segments2D (x0, y0, x1 = x0, y1 = y0, ..., colvar = NULL,
col = NULL, NAcol = "white", breaks = NULL,
colkey = NULL, clim = NULL, clab = NULL,
add = FALSE, plot = TRUE)
rect2D (x0, y0, x1 = x0, y1 = y0, ..., colvar = NULL,
col = NULL, NAcol = "white", breaks = NULL,
colkey = NULL, clim = NULL, clab = NULL,
add = FALSE, plot = TRUE)
polygon2D (x, y, ..., colvar = NULL,
col = NULL, NAcol = "white", breaks = NULL,
border = NA, facets = TRUE,
colkey = NULL, clim = NULL, clab = NULL,
add = FALSE, plot = TRUE)
x0 , y0 , z0 
coordinates of points from which to draw. 
x1 , y1 , z1 
coordinates of points to which to draw.
For 
x , y , z 
coordinates of the vertices of the polygon.
The polygon will be closed by joining the last point to the first point.
The coordinates can contain missing values ( 
colvar 
The variable used for coloring. It need
not be present, but if specified, it should be a vector of
dimension equal to the coordinates or to the number of polygons.
Values of 
theta , phi 
the angles defining the viewing direction.

col 
Color palette to be used for coloring the arrows or segments
as specified by the 
NAcol 
Colors to be used for 
breaks 
a set of finite numeric breakpoints for the colors; must have one more breakpoint than color and be in increasing order. Unsorted vectors will be sorted, with a warning. 
colkey 
A logical, The default is to draw the color key on side = 4, i.e. in the right margin.
If 
border 
The color of the lines drawn around the surface facets.
The default, 
facets 
If 
panel.first 
A 
clab 
Only if 
clim 
Only if 
bty 
The type of the perspective box, the default draws only the back panels.
Only effective if the persp
argument ( 
type 
The type of the arrow head, one of 
add 
Logical. If 
plot 
Logical. If 
... 
additional arguments passed to the plotting methods. The following persp arguments can be specified:
In addition, the perspbox arguments
For For For all the functions, arguments The arguments after ... must be matched exactly. 
Returns the viewing transformation matrix.
See trans3D.
arrows for the 2D arrows function on which arrows3D
is based.
segments for the 2D arrows function on which segments3D
is based.
# save plotting parameters
pm < par("mfrow")
## ========================================================================
## arrows, points, segments, box
## ========================================================================
# Create a grid of x, y, and z values
xx < yy < seq(0.8, 0.8, by = 0.2)
zz < seq(0.8, 0.8, by = 0.8)
M < mesh(xx, yy, zz)
x0 < M$x; y0 < M$y; z0 < M$z
x1 < x0 + 0.1
Col < c("red", "blue", "green")
arrows3D(x0, y0, z0, x1 = x1, colvar = z0, lwd = 2,
d = 2, clab = "zvalue", col = Col, length = 0.1,
xlim = c(0.8, 0.8), ylim = c(0.8, 0.8),
main = "arrows3D, points3D, segments3D, border3D")
# add starting point of arrows
points3D(x0, y0, z0, add = TRUE, colvar = z0,
colkey = FALSE, pch = ".", cex = 3, col = Col)
# use segments to add section
x0 < c(0.8, 0.8, 0.8, 0.8)
x1 < c( 0.8, 0.8, 0.8, 0.8)
y0 < c(0.8, 0.8, 0.8, 0.8)
y1 < c(0.8, 0.8, 0.8, 0.8)
z0 < c(0., 0., 0., 0.)
segments3D(x0, y0, z0, x1, y1, z1 = z0,
add = TRUE, col = "black", lwd = 2)
# add a box
border3D(0.8, 0.8, 0.8, 0.8, 0.8, 0.8,
col = "orange", add = TRUE, lwd = 3)
## ========================================================================
## boxes, cubes
## ========================================================================
# borders are boxes without facets
border3D(x0 = seq(0.8, 0.1, by = 0.1),
y0 = seq(0.8, 0.1, by = 0.1),
z0 = seq(0.8, 0.1, by = 0.1),
x1 = seq(0.8, 0.1, by = 0.1),
y1 = seq(0.8, 0.1, by = 0.1),
z1 = seq(0.8, 0.1, by = 0.1),
col = gg.col(8), lty = 2,
lwd = c(1, 4), phi = 20, main = "border3D")
box3D(x0 = 0.8, y0 = 0.8, z0 = 0.8,
x1 = 0.8, y1 = 0.8, z1 = 0.8,
border = "black", lwd = 2,
col = gg.col(1, alpha = 0.8),
main = "box3D")
box3D(x0 = seq(0.8, 0.1, by = 0.1),
y0 = seq(0.8, 0.1, by = 0.1),
z0 = seq(0.8, 0.1, by = 0.1),
x1 = seq(0.8, 0.1, by = 0.1),
y1 = seq(0.8, 0.1, by = 0.1),
z1 = seq(0.8, 0.1, by = 0.1),
col = rainbow(n = 8, alpha = 0.1),
border = "black", lwd = 2, phi = 20)
# here the perspective does not always work
# use alpha.col to set the transparency of a vector of colors
box3D(x0 = runif(3), y0 = runif(3), z0 = runif(3),
x1 = runif(3), y1 = runif(3), z1 = runif(3),
col = c("red", "lightblue", "orange"), alpha = 0.5,
border = "black", lwd = 2)
## ========================================================================
## rectangles
## ========================================================================
# at constant 'z'
rect3D(x0 = seq(0.8, 0.1, by = 0.1),
y0 = seq(0.8, 0.1, by = 0.1),
z0 = seq(0.8, 0.1, by = 0.1),
x1 = seq(0.8, 0.1, by = 0.1),
y1 = seq(0.8, 0.1, by = 0.1),
col = gg.col(8), border = "black",
bty = "g", lwd = 2, phi = 20, main = "rect3D")
# constant y and with transparent facets
rect3D(x0 = 0, y0 = 0, z0 = 0, x1 = 1, z1 = 5,
ylim = c(0, 1), facets = NA, border = "red",
bty = "g", lwd = 2, phi = 20)
# add rect at constant z, with colored facet
rect3D(x0 = 0, y0 = 0, z0 = 0, x1 = 1, y1 = 1,
border = "red", add = TRUE)
## ========================================================================
## arrows added to a persp plot
## ========================================================================
x < y < seq(10, 10, length = 30)
z < outer(x, y, FUN = function(x,y) x^2 + y^2)
persp3D(x, y, z, theta = 30, phi = 30,
col = "lightblue", ltheta = 120, shade = 0.75,
ticktype = "detailed", xlab = "X",
ylab = "Y", zlab = "x^2+y^2" )
# Points where to put the arrows
x < y < seq(10, 10, len = 6)
X0 < outer(x, y, FUN = function (x,y) x)
Y0 < outer(x, y, FUN = function (x,y) y)
Z0 < outer(x, y, FUN = function (x,y) x^2 + y^2)
X1 < X0 + 1
Y1 < Y0 + 1
Z1 < Z0 + 10
arrows3D(X0, Y0, Z0, X1, Y1, Z1, lwd = 2,
add = TRUE, type = "curved", col = "red")
segments3D(X0, Y0, Z0, X0, Y0, rep(0, length(X0)), lwd = 2,
add = TRUE, col = "green")
## ========================================================================
## polygon3D
## ========================================================================
x < runif(10)
y < runif(10)
z < runif(10)
polygon3D(x, y, z)
# several polygons, separated by NAs
x < runif(39)
y < runif(39)
z < runif(39)
ii < seq(4, 36, by = 4)
x[ii] < y[ii] < z[ii] < NA
# transparent colors (alpha)
polygon3D(x, y, z, border = "black", lwd = 3,
col = gg.col(length(ii) + 1, alpha = 0.8),
main = "polygon3D")
## ========================================================================
## 2D examples, with color key
## ========================================================================
arrows2D(x0 = runif(10), y0 = runif(10),
x1 = runif(10), y1 = runif(10), colvar = 1:10,
code = 3, main = "arrows2D, segments2D")
segments2D(x0 = runif(10), y0 = runif(10),
x1 = runif(10), y1 = runif(10), colvar = 1:10,
lwd = 2, add = TRUE, colkey = FALSE)
# transparency
rect2D(x0 = runif(10), y0 = runif(10),
x1 = runif(10), y1 = runif(10), colvar = 1:10,
alpha = 0.4, lwd = 2, main = "rect2D")
## ========================================================================
## polygon2D
## ========================================================================
x < runif(10)
y < runif(10)
polygon2D(x, y) # same as polygon
# several polygons, separated by NAs
x < runif(59)
y < runif(59)
ii < seq(5, 55, by = 5)
x[ii] < y[ii] < NA
# transparent colors (alpha)
polygon2D(x, y, border = "black", lwd = 3,
colvar = 1:(length(ii) + 1),
col = gg.col(), alpha = 0.2,
main = "polygon2D")
# restore plotting parameters
par(mfrow = pm)
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