plotMCMC: MCMC Diagnostic Plots

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Markov chain Monte Carlo diagnostic plots. The purpose of the package is to combine existing tools from the 'coda' and 'lattice' packages, and make it easy to adjust graphical details.

Author
Arni Magnusson [aut, cre], Ian Stewart [aut]
Date of publication
2014-03-12 18:03:59
Maintainer
Arni Magnusson <arnima@hafro.is>
License
GPL (>= 2)
Version
2.0-0

View on CRAN

Man pages

plotAuto
Plot MCMC Autocorrelation
plotCumu
Plot MCMC Cumulative Quantiles
plotDens
Plot MCMC Density
plotMCMC-package
MCMC Diagnostic Plots
plotQuant
Plot MCMC Quantiles
plotSplom
Plot MCMC Scatterplot Matrix
plotTrace
Plot MCMC Traces
xbio
MCMC Results for Biomass
xpar
MCMC Results for Model Parameters
xpro
MCMC Results for Future Projections
xrec
MCMC Results for Recruitment

Files in this package

plotMCMC
plotMCMC/inst
plotMCMC/inst/doc
plotMCMC/inst/doc/gallery.Rnw
plotMCMC/inst/doc/gallery.R
plotMCMC/inst/doc/gallery.pdf
plotMCMC/NAMESPACE
plotMCMC/NEWS
plotMCMC/data
plotMCMC/data/xpro.rda
plotMCMC/data/xrec.rda
plotMCMC/data/xpar.rda
plotMCMC/data/xbio.rda
plotMCMC/R
plotMCMC/R/plotDens.R
plotMCMC/R/plotAuto.R
plotMCMC/R/plotSplom.R
plotMCMC/R/plotCumu.R
plotMCMC/R/plotTrace.R
plotMCMC/R/plotQuant.R
plotMCMC/vignettes
plotMCMC/vignettes/gallery.Rnw
plotMCMC/MD5
plotMCMC/build
plotMCMC/build/vignette.rds
plotMCMC/DESCRIPTION
plotMCMC/man
plotMCMC/man/plotQuant.Rd
plotMCMC/man/plotAuto.Rd
plotMCMC/man/plotCumu.Rd
plotMCMC/man/xpro.Rd
plotMCMC/man/plotTrace.Rd
plotMCMC/man/plotDens.Rd
plotMCMC/man/plotSplom.Rd
plotMCMC/man/xrec.Rd
plotMCMC/man/xbio.Rd
plotMCMC/man/xpar.Rd
plotMCMC/man/plotMCMC-package.Rd