plotROC: Generate Useful ROC Curve Charts for Print and Interactive Use

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Most ROC curve plots obscure the cutoff values and inhibit interpretation and comparison of multiple curves. This attempts to address those shortcomings by providing plotting and interactive tools. Functions are provided to generate an interactive ROC curve plot for web use, and print versions. A Shiny application implementing the functions is also included.

Author
Michael C Sachs
Date of publication
2016-02-05 21:48:08
Maintainer
Michael C Sachs <sachsmc@gmail.com>
License
MIT + file LICENSE
Version
2.0.1
URLs

View on CRAN

Man pages

calc_auc
Calculate the Area under the ROC curve
calculate_multi_roc
Calculate the Empirical ROC curves for multiple biomarkers
calculate_roc
Calculate the Empirical ROC curve
direct_label
Add direct labels to a ROC plot
export_interactive_roc
Generate svg code for an ROC curve object
geom_roc
Empirical Receiver Operating Characteristic Curve
geom_rocci
Confidence regions for the ROC curve
getD3
Reads included JavaScript functions and returns them as a...
ggroc
Plot an ROC curve
melt_roc
Transform biomarkers stored as wide to long
multi_ggroc
Plot multiple ROC curves
plot_interactive_roc
Generate a standalone html document displaying an interactive...
plot_journal_roc
Plot an ROC curve for use in print
plotROC
Tools for plotting ROC Curves
shiny_plotROC
Start the plotROC Shiny app
stat_roc
Calculate the empirical Receiver Operating Characteristic...
stat_rocci
Calculate confidence regions for the empirical ROC curve
style_roc
Add guides and annotations to a ROC plot
verify_d
Check that D is suitable for using as binary disease status

Files in this package

plotROC
plotROC/inst
plotROC/inst/hoverPoints.js
plotROC/inst/CITATION
plotROC/inst/clickCis.js
plotROC/inst/shinyApp
plotROC/inst/shinyApp/ui.R
plotROC/inst/shinyApp/server.R
plotROC/inst/shinyApp/about.html
plotROC/inst/shinyApp/about.md
plotROC/inst/shinyApp/help.html
plotROC/inst/shinyApp/global.R
plotROC/inst/shinyApp/help.md
plotROC/inst/doc
plotROC/inst/doc/examples.html
plotROC/inst/doc/examples.Rmd
plotROC/inst/doc/examples.R
plotROC/inst/d3.v3.min.js
plotROC/tests
plotROC/tests/testthat.R
plotROC/tests/testthat
plotROC/tests/testthat/Rplots.pdf
plotROC/tests/testthat/test-calc.R
plotROC/NAMESPACE
plotROC/NEWS
plotROC/R
plotROC/R/getD3.R
plotROC/R/interactive_roc.R
plotROC/R/shiny_plotROC.R
plotROC/R/deprecated.R
plotROC/R/style_roc.R
plotROC/R/geom_rocci.R
plotROC/R/plotROC-package.R
plotROC/R/geom_roc.R
plotROC/R/calculate_roc.R
plotROC/vignettes
plotROC/vignettes/examples.Rmd
plotROC/README.md
plotROC/MD5
plotROC/build
plotROC/build/vignette.rds
plotROC/DESCRIPTION
plotROC/man
plotROC/man/plot_interactive_roc.Rd
plotROC/man/geom_rocci.Rd
plotROC/man/getD3.Rd
plotROC/man/melt_roc.Rd
plotROC/man/multi_ggroc.Rd
plotROC/man/direct_label.Rd
plotROC/man/export_interactive_roc.Rd
plotROC/man/geom_roc.Rd
plotROC/man/stat_rocci.Rd
plotROC/man/verify_d.Rd
plotROC/man/calc_auc.Rd
plotROC/man/plotROC.Rd
plotROC/man/calculate_multi_roc.Rd
plotROC/man/calculate_roc.Rd
plotROC/man/ggroc.Rd
plotROC/man/style_roc.Rd
plotROC/man/stat_roc.Rd
plotROC/man/shiny_plotROC.Rd
plotROC/man/plot_journal_roc.Rd
plotROC/LICENSE