geom_roc: Empirical Receiver Operating Characteristic Curve

Description Usage Arguments Format Computed variables Aesthetics See Also Examples

View source: R/geom_roc.R

Description

Display the empirical ROC curve. Useful for characterizing the classification accuracy of continuous measurements for predicting binary states

Usage

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GeomRoc

geom_roc(mapping = NULL, data = NULL, stat = "roc", n.cuts = 10,
  arrow = NULL, lineend = "butt", linejoin = "round", linemitre = 1,
  linealpha = 1, pointalpha = 1, pointsize = 0.5, labels = TRUE,
  labelsize = 3.88, labelround = 1, na.rm = TRUE, cutoffs.at = NULL,
  cutoff.labels = NULL, position = "identity", show.legend = NA,
  inherit.aes = TRUE, ...)

Arguments

mapping

Set of aesthetic mappings created by aes or aes_. If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot.

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame., and will be used as the layer data.

stat

Use to override the default connection between geom_roc and stat_roc.

n.cuts

Number of cutpoints to display along each curve

arrow

Arrow specification, as created by arrow

lineend

Line end style (round, butt, square)

linejoin

Line join style (round, mitre, bevel)

linemitre

Line mitre limit (number greater than 1)

linealpha

Alpha level for the lines, alpha.line is deprecated

pointalpha

Alpha level for the cutoff points, alpha.point is deprecated

pointsize

Size of cutoff points, size.point is deprecated

labels

Logical, display cutoff text labels

labelsize

Size of cutoff text labels

labelround

Integer, number of significant digits to round cutoff labels

na.rm

Remove missing values from curve

cutoffs.at

Vector of user supplied cutoffs to plot as points. If non-NULL, it will override the values of n.cuts and plot the observed cutoffs closest to the user-supplied ones.

cutoff.labels

vector of user-supplied labels for the cutoffs. Must be a character vector of the same length as cutoffs.at.

position

Position adjustment, either as a string, or the result of a call to a position adjustment function.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders.

...

other arguments passed on to layer. These are often aesthetics, used to set an aesthetic to a fixed value, like color = "red" or size = 3. They may also be parameters to the paired geom/stat.

Format

An object of class GeomRoc (inherits from Geom, ggproto) of length 6.

Computed variables

false_positive_fraction

estimate of false positive fraction

true_positive_fraction

estimate of true positive fraction

cutoffs

values of m at which estimates are calculated

Aesthetics

geom_roc understands the following aesthetics (required aesthetics are in bold):

See Also

See geom_rocci for displaying rectangular confidence regions for the empirical ROC curve, style_roc for adding guidelines and labels, and direct_label for adding direct labels to the curves. Also export_interactive_roc for creating interactive ROC curve plots for use in a web browser.

Examples

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D.ex <- rbinom(50, 1, .5)
rocdata <- data.frame(D = c(D.ex, D.ex), 
                   M = c(rnorm(50, mean = D.ex, sd = .4), rnorm(50, mean = D.ex, sd = 1)), 
                   Z = c(rep("A", 50), rep("B", 50)))

ggplot(rocdata, aes(m = M, d = D)) + geom_roc()

ggplot(rocdata, aes(m = M, d = D, color = Z)) + geom_roc()
ggplot(rocdata, aes(m = M, d = D)) + geom_roc() + facet_wrap(~ Z)
ggplot(rocdata, aes(m = M, d = D)) + geom_roc(n.cuts = 20)
ggplot(rocdata, aes(m = M, d = D)) + geom_roc(cutoffs.at = c(1.5, 1, .5, 0, -.5))
ggplot(rocdata, aes(m = M, d = D)) + geom_roc(labels = FALSE)
ggplot(rocdata, aes(m = M, d = D)) + geom_roc(size = 1.25)

plotROC documentation built on May 1, 2019, 8:05 p.m.