proteomics_filter: Proteomics Filter Object
In pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data
View source: R/filter_objects.R
proteomics_filter R Documentation
Proteomics Filter Object
Description
This function counts the number of peptides that map to each protein and/or
the number of proteins to which each individual peptide maps.
Usage
proteomics_filter(omicsData)
Arguments
omicsData
an object of class "pepData", the a result of
as.pepData or as.isobaricpepData. The e_meta
component of omicsData must be nonempty.
Value
An S3 object of class proteomicsFilt, which is a list with two
elements. The first element is a data frame of counts for each unique
peptide. The second element is a data frame with the counts for the number
of peptides that map to each unique protein.
Author(s)
Lisa Bramer, Kelly Stratton
Examples
library(pmartRdata)
my_filter <- proteomics_filter(omicsData = pep_object)
summary(my_filter, min_num_peps = 3)
pmartR documentation built on Oct. 15, 2024, 1:06 a.m.
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View source: R/filter_objects.R
| proteomics_filter | R Documentation |
Proteomics Filter Object
Description
This function counts the number of peptides that map to each protein and/or the number of proteins to which each individual peptide maps.
Usage
proteomics_filter(omicsData)
Arguments
omicsData |
an object of class "pepData", the a result of
|
Value
An S3 object of class proteomicsFilt, which is a list with two elements. The first element is a data frame of counts for each unique peptide. The second element is a data frame with the counts for the number of peptides that map to each unique protein.
Author(s)
Lisa Bramer, Kelly Stratton
Examples
library(pmartRdata)
my_filter <- proteomics_filter(omicsData = pep_object)
summary(my_filter, min_num_peps = 3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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