statres_volcano_plot: Volcano plot for the anova results of imd-anova

In pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Volcano plot for the anova results of imd-anova

Description

Plots a volcano plot showing negative log10 p-values on the y axis and fold change on the x axis. Each point is colored by fold change direction and whether or not it was significant by ANOVA.

Usage

statres_volcano_plot(
  volcano,
  data_scale,
  pval_thresh,
  fc_colors,
  fc_threshold,
  interactive,
  x_lab,
  y_lab,
  title_lab,
  legend_lab
)

Arguments

volcano	data frame produced by pmartR:::make_volcano_plot_df
data_scale	One of c("log2","log","log10"), for labeling purposes.
pval_thresh	numeric value between 0 and 1 for the alpha level to determine significance. Any values that are significant at this level will be colored based on fc_colors.
fc_colors, fc_threshold, interactive	passed from pmartR::plot.statRes()
x_lab	character string specifying the x-axis label.
y_lab	character string specifying the y-axis label.
title_lab	character string specifying the plot title.
legend_lab	character string specifying the legend title.

Value

'ggplot' object. A volcano plot.

pmartR documentation built on Oct. 15, 2024, 1:06 a.m.